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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59064 (95 seq.)
>W1711129182
LUTU01000005
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
496134
496048
-
Leu
CAG
[ENA]
¡û
>W1711143191
LVHE01000006
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
142195
142281
+
Leu
CAG
[ENA]
¡û
>W131240793
BAON01000006
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3255 [BAON]
16217
16303
+
Leu
CAG
[ENA]
¡û
>W131241415
BARL01000005
Alphaproteobacteria
Gluconobacter frateurii NBRC 103465 [BARL]
502462
502376
-
Leu
CAG
[ENA]
¡û
>W1711577294
MNPS01000001
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
217595
217681
+
Leu
CAG
[ENA]
¡û
>W1711577302
MNPS01000001
Alphaproteobacteria
Saccharibacter sp. M18 [MNPS]
727734
727648
-
Leu
CAG
[ENA]
¡û
>C171033074
CP014689
Alphaproteobacteria
Gluconobacter albidus TMW2.1191 [CP014689]
761344
761258
-
Leu
CAG
-
¡û
>C171033110
CP014691
Alphaproteobacteria
Neoasaia chiangmaiensis NBRC 101099 [CP014691]
2304096
2304010
-
Leu
CAG
-
¡û
>W131164864
ARBD01000005
Alphaproteobacteria
Acetobacter aceti ATCC 23746 [ARBD]
683508
683594
+
Leu
CAG
[ENA]
¡û
>C010064
CP000009
Alphaproteobacteria
Gluconobacter oxydans 621H [CP000009]
2018489
2018403
-
Leu
CAG
[Ensembl]
¡û
>W141195259
AYTY01000101
Alphaproteobacteria
Gluconobacter oxydans DSM 2003 [AYTY]
84188
84274
+
Leu
CAG
[ENA]
¡û
>W141224616
BAIO01000233
Alphaproteobacteria
Komagataeibacter kakiaceti JCM 25156 [BAIO]
3040
2954
-
Leu
CAG
[ENA]
¡û
>W141226067
BAJT01000005
Alphaproteobacteria
Asaia astilbis JCM 15831 [BAJT]
80710
80624
-
Leu
CAG
[ENA]
¡û
>W141226130
BAJU01000044
Alphaproteobacteria
Acetobacter okinawensis JCM 25146 [BAJU]
3974
3888
-
Leu
CAG
[ENA]
¡û
>W141227262
BAKW01000007
Alphaproteobacteria
Asaia platycodi JCM 25414 [BAKW]
91372
91286
-
Leu
CAG
[ENA]
¡û
>W141229944
BASM01000026
Alphaproteobacteria
Gluconobacter thailandicus NBRC 3257 [BASM]
221619
221533
-
Leu
CAG
[ENA]
¡û
>W141247992
CBLY010000006
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
593528
593614
+
Leu
CAG
[ENA]
¡û
>W141248005
CBLY010000007
Alphaproteobacteria
Parasaccharibacter apium AM169 [CBLY]
11179
11093
-
Leu
CAG
[ENA]
¡û
>WENV170669348
LAHS01000016
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
142468
142382
-
Leu
CAG
[ENA]
¢þ
>WENV170669349
LAHS01000016
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
142188
142102
-
Leu
CAG
[ENA]
¢þ
>C181077175
CP023189
Alphaproteobacteria
Acetobacter pomorum SH [CP023189]
834285
834199
-
Leu
CAG
-
¡û
>C181221212
LT900338
Alphaproteobacteria
Gluconobacter oxydans 621H [LT900338]
2018496
2018410
-
Leu
CAG
-
¡û
>C191090667
CP032485
Alphaproteobacteria
Neokomagataea tanensis AH13 [CP032485]
1688893
1688807
-
Leu
CAG
-
¡û
>C191157821
CP038141
Alphaproteobacteria
Swingsia samuiensis AH83 [CP038141]
1724800
1724714
-
Leu
CAG
-
¡û
>W141726119
JNAB01000044
Alphaproteobacteria
Kozakia baliensis [JNAB]
10932
10846
-
Leu
CAG
[ENA]
¡û
>W1910008296
BDEY01000067
Alphaproteobacteria
Acetobacter pasteurianus NBRC 3284 [BDEY]
123256
123342
+
Leu
CAG
[ENA]
¡û
>W1910015283
BDLW01000034
Alphaproteobacteria
Komagataeibacter diospyri MSKU15 [BDLW]
76745
76659
-
Leu
CAG
[ENA]
¡û
>W1910181375
BJLY01000001
Alphaproteobacteria
Gluconobacter roseus NBRC 3990 [BJLY]
610658
610572
-
Leu
CAG
[ENA]
¡û
>W1910181851
BJMK01000001
Alphaproteobacteria
Gluconobacter sphaericus NBRC 12467 [BJMK]
341012
340926
-
Leu
CAG
[ENA]
¡û
>W1910183165
BJNM01000005
Alphaproteobacteria
Gluconobacter oxydans NBRC 14819 [BJNM]
99598
99684
+
Leu
CAG
[ENA]
¡û
>W1910972014
NKCY01000002
Alphaproteobacteria
Komagataeibacter saccharivorans SRCM101450 [NKCY]
383514
383600
+
Leu
CAG
[ENA]
¡û
>W1911138384
NOXG01000002
Alphaproteobacteria
Novacetimonas pomaceti T5K1 [NOXG]
201600
201514
-
Leu
CAG
[ENA]
¡û
>W1810000591
BEWL01000001
Alphaproteobacteria
Gluconobacter albidus NBRC 3250 [BEWL]
234239
234325
+
Leu
CAG
[ENA]
¡û
>W1810000638
BEWM01000001
Alphaproteobacteria
Gluconobacter cerinus NBRC 3267 [BEWM]
382423
382509
+
Leu
CAG
[ENA]
¡û
>W1810000687
BEWN01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 3264 [BEWN]
509328
509242
-
Leu
CAG
[ENA]
¡û
>W1810000728
BEWO01000001
Alphaproteobacteria
Gluconobacter japonicus NBRC 3271 [BEWO]
17589
17675
+
Leu
CAG
[ENA]
¡û
>W1810000776
BEWP01000001
Alphaproteobacteria
Gluconobacter kondonii NBRC 3266 [BEWP]
279541
279627
+
Leu
CAG
[ENA]
¡û
>C151006202
CP004373
Alphaproteobacteria
Gluconobacter oxydans DSM 3504 [CP004373]
2236920
2236834
-
Leu
CAG
[Ensembl]
¡û
>C151091062
CP012111
Alphaproteobacteria
Acetobacter pasteurianus Ab3 [CP012111]
187994
188080
+
Leu
CAG
[Ensembl]
¡û
>W1511620414
LCTG01000001
Alphaproteobacteria
Gluconobacter oxydans NL71 [LCTG]
503742
503828
+
Leu
CAG
[ENA]
¡û
>W11184479
BABW01000762
Alphaproteobacteria
Acetobacter aceti NBRC 14818 [BABW]
1146
1232
+
Leu
CAG
[ENA]
¡û
>W11186875
CADS01000002
Alphaproteobacteria
Komagataeibacter europaeus 5P3 [CADS]
129718
129804
+
Leu
CAG
[ENA]
¡û
>W11186949
CADT01000006
Alphaproteobacteria
Komagataeibacter oboediens 174Bp2 [CADT]
67731
67817
+
Leu
CAG
[ENA]
¡û
>C161096034
CP016328
Alphaproteobacteria
Gluconobacter oxydans 1.637 [CP016328]
1656876
1656790
-
Leu
CAG
-
¡û
>W121016307
AGQV01000001
Alphaproteobacteria
Gluconobacter morbifer G707 [AGQV]
576776
576690
-
Leu
CAG
[ENA]
¡û
>W121034251
AHKI01000006
Alphaproteobacteria
Gluconobacter thailandicus WSH-003 [AHKI]
61815
61729
-
Leu
CAG
[ENA]
¡û
>W121123400
BADZ01000001
Alphaproteobacteria
Gluconobacter frateurii NBRC 101659 [BADZ]
365998
365912
-
Leu
CAG
[ENA]
¡û
>W1610040658
BALE01000017
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
191855
191769
-
Leu
CAG
[ENA]
¡û
>W1610041167
BANG01000005
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
193083
193169
+
Leu
CAG
[ENA]
¡û
>W1610041221
BANH01000024
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
16175
16261
+
Leu
CAG
[ENA]
¡û
>W1610076845
BCZB01000007
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
44572
44486
-
Leu
CAG
[ENA]
¡û
>C131009935
CP003926
Alphaproteobacteria
Gluconobacter oxydans H24 [CP003926]
222589
222675
+
Leu
CAG
[Ensembl]
¡û
>W1610624002
LHZB01000111
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
127844
127930
+
Leu
CAG
[ENA]
¡û
>W1610624148
LHZD01000022
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
101347
101433
+
Leu
CAG
[ENA]
¡û
>W1610624163
LHZE01000065
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
2653
2567
-
Leu
CAG
[ENA]
¡û
>W1610624245
LHZG01000075
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
2642
2556
-
Leu
CAG
[ENA]
¡û
>W1610624319
LHZH01000126
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
33393
33307
-
Leu
CAG
[ENA]
¡û
>W1610624358
LHZI01001564
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
705
619
-
Leu
CAG
[ENA]
¡û
>W1610624393
LHZJ01000071
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
40768
40682
-
Leu
CAG
[ENA]
¡û
>W1610624442
LHZK01000114
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
53749
53663
-
Leu
CAG
[ENA]
¡û
>W1610624476
LHZL01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
3582
3668
+
Leu
CAG
[ENA]
¡û
>W1610624560
LHZM01000090
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
538140
538054
-
Leu
CAG
[ENA]
¡û
>W1610624607
LHZN01000146
Alphaproteobacteria
Gluconobacter albidus [LHZN]
56052
56138
+
Leu
CAG
[ENA]
¡û
>W1610624615
LHZO01000051
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
83717
83631
-
Leu
CAG
[ENA]
¡û
>W1610624663
LHZP01000018
Alphaproteobacteria
Gluconobacter roseus [LHZP]
85927
86013
+
Leu
CAG
[ENA]
¡û
>W1610624788
LHZR01000114
Alphaproteobacteria
Gluconobacter albidus [LHZR]
277209
277295
+
Leu
CAG
[ENA]
¡û
>W1610624836
LHZS01000107
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
221561
221475
-
Leu
CAG
[ENA]
¡û
>W1610624973
LHZW01000032
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
2653
2567
-
Leu
CAG
[ENA]
¡û
>W1610940255
LUTU01000005
Alphaproteobacteria
Gluconobacter cerinus [LUTU]
496134
496048
-
Leu
CAG
[ENA]
¡û
>W1610954199
LVHE01000006
Alphaproteobacteria
Gluconobacter japonicus [LVHE]
142195
142281
+
Leu
CAG
[ENA]
¡û
>W1710037856
BALE01000017
Alphaproteobacteria
Tanticharoenia sakaeratensis NBRC 103193 [BALE]
191855
191769
-
Leu
CAG
[ENA]
¡û
>W1710038365
BANG01000005
Alphaproteobacteria
Gluconobacter frateurii M-2 [BANG]
193083
193169
+
Leu
CAG
[ENA]
¡û
>W1710038419
BANH01000024
Alphaproteobacteria
Gluconobacter thailandicus F149-1 = NBRC 100600 [BANH]
16175
16261
+
Leu
CAG
[ENA]
¡û
>W1710074534
BCZB01000007
Alphaproteobacteria
Neokomagataea thailandica NBRC 106555 [BCZB]
44572
44486
-
Leu
CAG
[ENA]
¡û
>W1710624285
JOMN01000003
Alphaproteobacteria
Acetobacter sp. DmW_043 [JOMN]
91250
91336
+
Leu
CAG
[ENA]
¡û
>W1710624327
JOMO01000005
Alphaproteobacteria
Acetobacter orientalis [JOMO]
39220
39134
-
Leu
CAG
[ENA]
¡û
>W1710624665
JOPD01000003
Alphaproteobacteria
Acetobacter sp. DsW_54 [JOPD]
380586
380672
+
Leu
CAG
[ENA]
¡û
>W1710624725
JOPF01000009
Alphaproteobacteria
Gluconobacter sp. DsW_056 [JOPF]
111428
111514
+
Leu
CAG
[ENA]
¡û
>W1710624815
JOPH01000057
Alphaproteobacteria
Gluconobacter sp. DsW_058 [JOPH]
199555
199469
-
Leu
CAG
[ENA]
¡û
>W1710755120
LHZB01000111
Alphaproteobacteria
Gluconobacter potus oxydans [LHZB]
127844
127930
+
Leu
CAG
[ENA]
¡û
>W1710755266
LHZD01000022
Alphaproteobacteria
Gluconobacter oxydans [LHZD]
101347
101433
+
Leu
CAG
[ENA]
¡û
>W1710755281
LHZE01000065
Alphaproteobacteria
Gluconobacter oxydans [LHZE]
2653
2567
-
Leu
CAG
[ENA]
¡û
>W1710755363
LHZG01000075
Alphaproteobacteria
Gluconobacter oxydans [LHZG]
2642
2556
-
Leu
CAG
[ENA]
¡û
>W1710755437
LHZH01000126
Alphaproteobacteria
Gluconobacter japonicus [LHZH]
33393
33307
-
Leu
CAG
[ENA]
¡û
>W1710755476
LHZI01001564
Alphaproteobacteria
Gluconobacter japonicus [LHZI]
705
619
-
Leu
CAG
[ENA]
¡û
>W1710755511
LHZJ01000071
Alphaproteobacteria
Gluconobacter japonicus [LHZJ]
40768
40682
-
Leu
CAG
[ENA]
¡û
>W1710755560
LHZK01000114
Alphaproteobacteria
Gluconobacter japonicus [LHZK]
53749
53663
-
Leu
CAG
[ENA]
¡û
>W1710755594
LHZL01000086
Alphaproteobacteria
Gluconobacter oxydans [LHZL]
3582
3668
+
Leu
CAG
[ENA]
¡û
>W1710755678
LHZM01000090
Alphaproteobacteria
Gluconobacter thailandicus [LHZM]
538140
538054
-
Leu
CAG
[ENA]
¡û
>W1710755725
LHZN01000146
Alphaproteobacteria
Gluconobacter albidus [LHZN]
56052
56138
+
Leu
CAG
[ENA]
¡û
>W1710755733
LHZO01000051
Alphaproteobacteria
Gluconobacter japonicus [LHZO]
83717
83631
-
Leu
CAG
[ENA]
¡û
>W1710755781
LHZP01000018
Alphaproteobacteria
Gluconobacter roseus [LHZP]
85927
86013
+
Leu
CAG
[ENA]
¡û
>W1710755906
LHZR01000114
Alphaproteobacteria
Gluconobacter albidus [LHZR]
277209
277295
+
Leu
CAG
[ENA]
¡û
>W1710755954
LHZS01000107
Alphaproteobacteria
Gluconobacter thailandicus [LHZS]
221561
221475
-
Leu
CAG
[ENA]
¡û
>W1710756091
LHZW01000032
Alphaproteobacteria
Gluconobacter oxydans [LHZW]
2653
2567
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK