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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59133 (56 seq.)
>W1710871479
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
732869
732955
+
Leu
TAA
[ENA]
¡û
>W1710939216
LONN01000008
Gammaproteobacteria
Escherichia coli [LONN]
63770
63856
+
Leu
TAA
[ENA]
¡û
>W1711509676
MKZW02000001
Gammaproteobacteria
[Kluyvera] intestini [MKZW]
4866843
4866929
+
Leu
TAA
[ENA]
¡û
>W1711680166
MRWD01000001
Gammaproteobacteria
Rouxiella silvae [MRWD]
14135
14049
-
Leu
TAA
[ENA]
¡û
>W1711795438
MWPR01000035
Gammaproteobacteria
Kluyvera intermedia [MWPR]
54262
54348
+
Leu
TAA
[ENA]
¡û
>C171004604
CP010160
Gammaproteobacteria
Escherichia coli H1 [CP010160]
455342
455256
-
Leu
TAA
-
¡û
>W131052252
AMYV01000009
Gammaproteobacteria
gamma proteobacterium WG36 [AMYV]
18015
17929
-
Leu
TAA
[ENA]
¡û
>WENV181814175
OGTF01000210
[OGTF] human gut metagenome; fecal sample 5 from infant 5
13836
13922
+
Leu
TAA
[ENA]
¢þ
>WENV182408565
OIFF01000035
[OIFF] human gut metagenome; stool
143502
143588
+
Leu
TAA
[ENA]
¢þ
>WENV182412098
OIFS01000029
[OIFS] human gut metagenome; stool
6491
6405
-
Leu
TAA
[ENA]
¢þ
>WENV182413060
OIFX01000038
[OIFX] human gut metagenome; stool
143502
143588
+
Leu
TAA
[ENA]
¢þ
>WENV182833168
OKER01000823
[OKER] human gut metagenome; human gut
4532
4446
-
Leu
TAA
[ENA]
¢þ
>WENV182953326
OKVY01000082
[OKVY] human gut metagenome; human gut
870
784
-
Leu
TAA
[ENA]
¢þ
>WENV182966251
OKWV01000071
[OKWV] human gut metagenome; stool
998
912
-
Leu
TAA
[ENA]
¢þ
>WENV183065774
OLIJ01016227
[OLIJ] metagenome; faeces
363
277
-
Leu
TAA
[ENA]
¢þ
>C181128730
CP026192
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH2 [CP026192]
3577386
3577472
+
Leu
TAA
-
¡û
>C181128798
CP026193
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH1 [CP026193]
1366568
1366654
+
Leu
TAA
-
¡û
>C181128935
CP026197
Gammaproteobacteria
Enterobacteriaceae bacterium ENNIH3 [CP026197]
4591133
4591047
-
Leu
TAA
-
¡û
>C181147778
CP027225
Gammaproteobacteria
Phytobacter sp. SCO41 [CP027225]
2082425
2082511
+
Leu
TAA
-
¡û
>C181166474
CP028520
Gammaproteobacteria
Lelliottia sp. WB101 [CP028520]
2799533
2799619
+
Leu
TAA
-
¡û
>C191004884
AP018756
Gammaproteobacteria
Phytobacter sp. MRY16-398 [AP018756]
2158269
2158355
+
Leu
TAA
-
¡û
>W1911224125
NRVF01000095
Gammaproteobacteria
Escherichia coli 1262 [NRVF]
509564
509650
+
Leu
TAA
[ENA]
¡û
>W1911273557
NTDD01000018
Gammaproteobacteria
Escherichia coli KCJK467 [NTDD]
53130
53044
-
Leu
TAA
[ENA]
¡û
>W1911273646
NTDE01000019
Gammaproteobacteria
Escherichia coli KCJK500 [NTDE]
417147
417061
-
Leu
TAA
[ENA]
¡û
>W1911273768
NTDF01000041
Gammaproteobacteria
Escherichia coli KCJK501 [NTDF]
423750
423664
-
Leu
TAA
[ENA]
¡û
>W1911273855
NTDG01000037
Gammaproteobacteria
Escherichia coli KCJK502 [NTDG]
423750
423664
-
Leu
TAA
[ENA]
¡û
>W1911273910
NTDH01000030
Gammaproteobacteria
Escherichia coli KCJK506 [NTDH]
102560
102646
+
Leu
TAA
[ENA]
¡û
>W1911274116
NTDK01000012
Gammaproteobacteria
Escherichia coli KCJK507 [NTDK]
695107
695193
+
Leu
TAA
[ENA]
¡û
>W1911274203
NTDL01000014
Gammaproteobacteria
Escherichia coli KCJK511 [NTDL]
489985
490071
+
Leu
TAA
[ENA]
¡û
>W1911274292
NTDM01000014
Gammaproteobacteria
Escherichia coli KCJK512 [NTDM]
99320
99406
+
Leu
TAA
[ENA]
¡û
>W1911274428
NTDN01000053
Gammaproteobacteria
Escherichia coli KCJK513 [NTDN]
96915
97001
+
Leu
TAA
[ENA]
¡û
>W1911274456
NTDO01000011
Gammaproteobacteria
Escherichia coli KCJK514 [NTDO]
96724
96810
+
Leu
TAA
[ENA]
¡û
>W1810147321
PIQM01000002
Gammaproteobacteria
Cedecea lapagei SLM1 [PIQM]
3463768
3463854
+
Leu
TAA
[ENA]
¡û
>W1810185348
PKFT01000004
Gammaproteobacteria
Lelliottia sp. F153 [PKFT]
68009
67923
-
Leu
TAA
[ENA]
¡û
>W1810185388
PKFU01000002
Gammaproteobacteria
Lelliottia sp. F159 [PKFU]
273089
273003
-
Leu
TAA
[ENA]
¡û
>W1810185473
PKFV01000003
Gammaproteobacteria
Lelliottia sp. F154 [PKFV]
273090
273004
-
Leu
TAA
[ENA]
¡û
>W1810191982
PKKX01000070
Gammaproteobacteria
Escherichia coli JEONG-9598 [PKKX]
67142
67228
+
Leu
TAA
[ENA]
¡û
>W1810423682
PYTY01000105
Gammaproteobacteria
Kluyvera sp. Nf5 [PYTY]
521
435
-
Leu
TAA
[ENA]
¡û
>W1810542830
QDJZ01000062
Gammaproteobacteria
Escherichia coli JEONG-9599 [QDJZ]
67145
67231
+
Leu
TAA
[ENA]
¡û
>W1810542914
QDKA01000045
Gammaproteobacteria
Escherichia coli JEONG-9600 [QDKA]
65294
65380
+
Leu
TAA
[ENA]
¡û
>W1810542996
QDKB01000124
Gammaproteobacteria
Escherichia coli JEONG-9601 [QDKB]
53130
53044
-
Leu
TAA
[ENA]
¡û
>W1810543034
QDKC01000063
Gammaproteobacteria
Escherichia coli JEONG-9602 [QDKC]
42238
42324
+
Leu
TAA
[ENA]
¡û
>W1810543156
QDKD01000109
Gammaproteobacteria
Escherichia coli JEONG-9603 [QDKD]
4997
5083
+
Leu
TAA
[ENA]
¡û
>W1810658467
QJJI01000001
Gammaproteobacteria
Grimontella sp. AG753 [QJJI]
695
609
-
Leu
TAA
[ENA]
¡û
>W1810785334
QRBM01000008
Gammaproteobacteria
Escherichia coli 1-RC-17-04352 [QRBM]
752
666
-
Leu
TAA
[ENA]
¡û
>C151085189
CP011602
Gammaproteobacteria
Phytobacter ursingii CAV1151 [CP011602]
1206586
1206672
+
Leu
TAA
[Ensembl]
¡û
>W1511285744
JOUD01000009
Gammaproteobacteria
Enterobacteriaceae bacterium ATCC 29904 [JOUD]
586884
586970
+
Leu
TAA
[ENA]
¡û
>W1511358087
JRWU01000001
Gammaproteobacteria
Rouxiella chamberiensis 130333 [JRWU]
627517
627603
+
Leu
TAA
[ENA]
¡û
>W1511389646
JSWZ01000002
Gammaproteobacteria
Enterobacter cloacae CH1 [JSWZ]
598346
598432
+
Leu
TAA
[ENA]
¡û
>W1511499407
JXAF01000041
Gammaproteobacteria
Enterobacter sp. Bisph2 [JXAF]
534
448
-
Leu
TAA
[ENA]
¡û
>C161090678
CP015774
Gammaproteobacteria
Lelliottia amnigena ZB04 [CP015774]
2823820
2823734
-
Leu
TAA
[Ensembl]
¡û
>W121062063
AJHJ01000009
Gammaproteobacteria
Serratia sp. M24T3 [AJHJ]
13160
13074
-
Leu
TAA
[ENA]
¡û
>W1610733825
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
732869
732955
+
Leu
TAA
[ENA]
¡û
>W1610795340
LONN01000008
Gammaproteobacteria
Escherichia coli [LONN]
63770
63856
+
Leu
TAA
[ENA]
¡û
>W1710560023
FONB01000012
Gammaproteobacteria
Phytobacter palmae S29 [FONB]
17181
17095
-
Leu
TAA
[ENA]
¡û
>W1710604781
FVZI01000001
Gammaproteobacteria
Enterobacter sp. NFR05 [FVZI]
747399
747485
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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