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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59151 (40 seq.)
>W1710906986
LNOL01000022
Betaproteobacteria
Alcaligenes faecalis [LNOL]
9949
10035
+
Tyr
GTA
[ENA]
¡û
>W1710995935
LQAS01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
302931
303017
+
Tyr
GTA
[ENA]
¡û
>W1711135941
LUZQ01000106
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
16031
16117
+
Tyr
GTA
[ENA]
¡û
>W1711710524
MSZN01000038
Betaproteobacteria
Alcaligenes faecalis [MSZN]
10099
10185
+
Tyr
GTA
[ENA]
¡û
>W1711710574
MSZO01000025
Betaproteobacteria
Alcaligenes faecalis [MSZO]
63707
63793
+
Tyr
GTA
[ENA]
¡û
>W1711710613
MSZP01000006
Betaproteobacteria
Alcaligenes faecalis [MSZP]
64756
64670
-
Tyr
GTA
[ENA]
¡û
>W1711710675
MSZQ01000022
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
64777
64691
-
Tyr
GTA
[ENA]
¡û
>W1711710725
MSZR01000022
Betaproteobacteria
Alcaligenes faecalis [MSZR]
9993
10079
+
Tyr
GTA
[ENA]
¡û
>W1711711909
MTBI01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
981
895
-
Tyr
GTA
[ENA]
¡û
>C171115517
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
3999792
3999706
-
Tyr
GTA
-
¡û
>W131051783
AMXV01000049
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
10193
10279
+
Tyr
GTA
[ENA]
¡û
>W131223077
AUBT01000022
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
1049
963
-
Tyr
GTA
[ENA]
¡û
>W141104427
AVOG02000034
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
300969
301055
+
Tyr
GTA
[ENA]
¡û
>W141237728
BBJQ01000005
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
348226
348312
+
Tyr
GTA
[ENA]
¡û
>WENV183733632
PJTY01008107
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
878
964
+
Tyr
GTA
[ENA]
¢þ
>WENV183741098
PJUF01040850
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
325
411
+
Tyr
GTA
[ENA]
¢þ
>WENV170645945
JQGF01001469
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
9804
9890
+
Tyr
GTA
[ENA]
¢þ
>WENV170655553
JTFN01044465
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
231
145
-
Tyr
GTA
[ENA]
¢þ
>WENV170656521
JTFO01021014
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
218
132
-
Tyr
GTA
[ENA]
¢þ
>WENV170657093
JTFO01083073
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
218
132
-
Tyr
GTA
[ENA]
¢þ
>WENV170657483
JTFO01166009
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
219
133
-
Tyr
GTA
[ENA]
¢þ
>WENV170657620
JTFP01005317
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
837
751
-
Tyr
GTA
[ENA]
¢þ
>C181053236
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
4030622
4030536
-
Tyr
GTA
-
¡û
>C181088594
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
3743536
3743450
-
Tyr
GTA
-
¡û
>C191023131
CP022987
Betaproteobacteria
Pollutimonas thiosulfatoxidans YE3 [CP022987]
2972572
2972658
+
Tyr
GTA
-
¡û
>C191085273
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
4285228
4285142
-
Tyr
GTA
-
¡û
>C191091174
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
2481132
2481046
-
Tyr
GTA
-
¡û
>C191113979
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
944135
944049
-
Tyr
GTA
-
¡û
>C191149660
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
1840194
1840108
-
Tyr
GTA
-
¡û
>W1810583914
QEXO01000005
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
69298
69212
-
Tyr
GTA
[ENA]
¡û
>W1511321009
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
496008
496094
+
Tyr
GTA
[ENA]
¡û
>W1511537458
JZBR01000003
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
43150
43064
-
Tyr
GTA
[ENA]
¡û
>C161051352
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
2420751
2420837
+
Tyr
GTA
[Ensembl]
¡û
>W121091193
AKMR01000002
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
199677
199763
+
Tyr
GTA
[ENA]
¡û
>W1610093564
CYTB01000004
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
348181
348267
+
Tyr
GTA
[ENA]
¡û
>W1610766000
LNOL01000022
Betaproteobacteria
Alcaligenes faecalis [LNOL]
9949
10035
+
Tyr
GTA
[ENA]
¡û
>W1610850592
LQAS01000004
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
302931
303017
+
Tyr
GTA
[ENA]
¡û
>W1610921514
LSUO01000011
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
385
299
-
Tyr
GTA
[ENA]
¡û
>W1610947061
LUZQ01000106
Betaproteobacteria
Burkholderiales bacterium Beta_01 [LUZQ]
16031
16117
+
Tyr
GTA
[ENA]
¡û
>W1710082531
BDHG01000003
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
348353
348439
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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