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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59202 (47 seq.)
>W1710913378
LNSK01000002
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
107692
107606
-
Leu
TAA
[ENA]
¡û
>W131100419
AOUN01000006
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
59000
59086
+
Leu
TAA
[ENA]
¡û
>W1711127854
LURA01000067
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
30637
30551
-
Leu
TAA
[ENA]
¡û
>W1711127894
LURB01000055
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
15600
15686
+
Leu
TAA
[ENA]
¡û
>W1711127956
LURE01000022
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
28341
28427
+
Leu
TAA
[ENA]
¡û
>W1711128016
LURH01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
74638
74724
+
Leu
TAA
[ENA]
¡û
>W1711128072
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
891878
891792
-
Leu
TAA
[ENA]
¡û
>W1711229625
LXYP01000027
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
88934
89020
+
Leu
TAA
[ENA]
¡û
>W1711503961
MKUC01000052
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
10009
9923
-
Leu
TAA
[ENA]
¡û
>WENV181168019
OEIU01130278
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
256
170
-
Leu
TAA
[ENA]
¢þ
>WENV181311933
OFJB01023756
[OFJB] sludge metagenome; sludge
1423
1337
-
Leu
TAA
[ENA]
¢þ
>WENV181402062
OFTY01000073
[OFTY] sludge metagenome; sludge
79598
79512
-
Leu
TAA
[ENA]
¢þ
>WENV182558944
OJDN01020579
[OJDN] seawater metagenome; Sea water
324
238
-
Leu
TAA
[ENA]
¢þ
>WENV170727437
LULE01000083
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
3620
3534
-
Leu
TAA
[ENA]
¢þ
>WENV170728780
LULF01000667
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
9507
9421
-
Leu
TAA
[ENA]
¢þ
>WENV170729997
LULG01006241
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1120
1206
+
Leu
TAA
[ENA]
¢þ
>WENV170732542
LULJ01000088
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
28511
28597
+
Leu
TAA
[ENA]
¢þ
>WENV170734583
LULK01010273
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
1954
2040
+
Leu
TAA
[ENA]
¢þ
>WENV170736322
LULM01001043
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
4386
4472
+
Leu
TAA
[ENA]
¢þ
>WENV170737565
LULO01000709
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
4309
4223
-
Leu
TAA
[ENA]
¢þ
>WENV170738359
LULP01000035
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
28341
28427
+
Leu
TAA
[ENA]
¢þ
>WENV170742646
LULV01000026
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
15600
15686
+
Leu
TAA
[ENA]
¢þ
>WENV170743472
LULW01000143
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
30637
30551
-
Leu
TAA
[ENA]
¢þ
>WENV170759523
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
891878
891792
-
Leu
TAA
[ENA]
¢þ
>WENV170761372
LUMV01000089
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
18926
18840
-
Leu
TAA
[ENA]
¢þ
>WENV170762507
LUMW01012233
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
966
1052
+
Leu
TAA
[ENA]
¢þ
>C181062148
CP022336
Alphaproteobacteria
Sphingorhabdus sp. SMR4y [CP022336]
3315469
3315383
-
Leu
TAA
-
¡û
>C181068277
CP022548
Alphaproteobacteria
Sphingorhabdus sp. YGSMI21 [CP022548]
2188554
2188468
-
Leu
TAA
-
¡û
>C181133091
CP026381
Alphaproteobacteria
Sphingopyxis sp. MG [CP026381]
1331652
1331566
-
Leu
TAA
-
¡û
>C181220350
LT703001
Alphaproteobacteria
Sphingorhabdus sp. Alg231-15 [LT703001, LT703002]
1646972
1647058
+
Leu
TAA
-
¡û
>W1910501761
FYAT01000012
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
30036
30122
+
Leu
TAA
[ENA]
¡û
>W1910549108
FZPA01000002
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
243812
243898
+
Leu
TAA
[ENA]
¡û
>W1911411581
NWUR01000012
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
259146
259060
-
Leu
TAA
[ENA]
¡û
>W1911532512
OGVD01000003
Alphaproteobacteria
Sphingorhabdus sp. EL138 [OGVD]
263387
263473
+
Leu
TAA
[ENA]
¡û
>C161055615
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
3341687
3341773
+
Leu
TAA
[Ensembl]
¡û
>C161073962
CP014545
Alphaproteobacteria
Sphingorhabdus sp. M41 [CP014545]
2509391
2509477
+
Leu
TAA
[Ensembl]
¡û
>W1610077666
BCZQ01000004
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
292512
292598
+
Leu
TAA
[ENA]
¡û
>W1610771737
LNSK01000002
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
107692
107606
-
Leu
TAA
[ENA]
¡û
>W1610938968
LURA01000067
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
30637
30551
-
Leu
TAA
[ENA]
¡û
>W1610939008
LURB01000055
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
15600
15686
+
Leu
TAA
[ENA]
¡û
>W1610939070
LURE01000022
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
28341
28427
+
Leu
TAA
[ENA]
¡û
>W1610939130
LURH01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
74638
74724
+
Leu
TAA
[ENA]
¡û
>W1610939186
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
891878
891792
-
Leu
TAA
[ENA]
¡û
>W1611013495
LXYP01000027
Alphaproteobacteria
Sphingomonadales bacterium EhC05 [LXYP]
88934
89020
+
Leu
TAA
[ENA]
¡û
>W1710075304
BCZQ01000004
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
292512
292598
+
Leu
TAA
[ENA]
¡û
>W1710593914
FSQW01000002
Alphaproteobacteria
Parasphingorhabdus marina DSM 22363 [FSQW]
1381107
1381193
+
Leu
TAA
[ENA]
¡û
>W1710609453
FXWL01000003
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
259240
259154
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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