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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59255 (59 seq.)
>A171001116
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
557863
557948
+
Leu
TAA
-
¡û
>A171001302
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
3006040
3006125
+
Leu
TAA
-
¡û
>A171002471
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1182205
1182120
-
Leu
TAA
-
¡û
>A171003151
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
167477
167562
+
Leu
TAA
-
¡û
>A171003470
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
355528
355611
+
Leu
TAA
-
¡û
>A171004128
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
331856
331939
+
Leu
TAA
-
¡û
>A171006945
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
464386
464299
-
Leu
TAA
-
¡û
>A171006979
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
2327334
2327251
-
Leu
TAA
-
¡û
>WENV170679663
LFCJ01000106
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6657
6574
-
Leu
TAA
[ENA]
¢þ
>WENV170679802
LFCJ01000546
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
23228
23311
+
Leu
TAA
[ENA]
¢þ
>WENV170679942
LFCJ01001788
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
359
276
-
Leu
TAA
[ENA]
¢þ
>WENV170680464
LFCJ01011823
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5890
5975
+
Leu
TAA
[ENA]
¢þ
>WENV170681665
LFFM01001931
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13493
13576
+
Leu
TAA
[ENA]
¢þ
>WENV170702794
LKMJ01004112
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
13063
13146
+
Leu
TAA
[ENA]
¢þ
>WENV170702889
LKMJ01004533
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4381
4297
-
Leu
TAA
[ENA]
¢þ
>WENV170704039
LKMJ01021262
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5467
5550
+
Leu
TAA
[ENA]
¢þ
>W1910226705
FMZP01000011
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
3756
3671
-
Leu
TAA
[ENA]
¡û
>W1910226912
FNFE01000002
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
755075
755160
+
Leu
TAA
[ENA]
¡û
>W1910227125
FNLC01000001
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
195101
195186
+
Leu
TAA
[ENA]
¡û
>W1910229327
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
1288265
1288182
-
Leu
TAA
[ENA]
¡û
>W1910229811
FOFD01000003
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
615206
615122
-
Leu
TAA
[ENA]
¡û
>W1910229955
FOIS01000004
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
278376
278461
+
Leu
TAA
[ENA]
¡û
>W1910230231
FOKW01000001
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
157032
157117
+
Leu
TAA
[ENA]
¡û
>W1910230851
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
256317
256400
+
Leu
TAA
[ENA]
¡û
>W1910340501
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
738557
738474
-
Leu
TAA
[ENA]
¡û
>W1910572551
JMIP02000013
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
8265
8182
-
Leu
TAA
[ENA]
¡û
>W1910572734
JNCS01000017
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
1595
1680
+
Leu
TAA
[ENA]
¡û
>W1910575890
JROF01000025
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
20381
20466
+
Leu
TAA
[ENA]
¡û
>W1910583004
JXAN01000012
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
32761
32845
+
Leu
TAA
[ENA]
¡û
>W1910657567
MASN01000030
Euryarchaeota
Natrialba sp. SSL1 [MASN]
192450
192365
-
Leu
TAA
[ENA]
¡û
>W1910826114
MWPH01000003
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
726922
726837
-
Leu
TAA
[ENA]
¡û
>W1911717985
QQTY01000002
Euryarchaeota
Natronorubrum halophilum SHR37 [QQTY]
38524
38609
+
Leu
TAA
[ENA]
¡û
>W1610001035
ACIT01000001
Euryarchaeota
Natrialba magadii ATCC 43099 [ACIT]
1140224
1140309
+
Leu
TAA
[ENA]
¡û
>W1610004049
AGFZ01000022
Euryarchaeota
Halobiforma lacisalsi AJ5 [AGFZ]
23711
23798
+
Leu
TAA
[ENA]
¡û
>W1610004084
AGIM01000004
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
89968
90053
+
Leu
TAA
[ENA]
¡û
>W1610011715
AOHS01000024
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
23277
23192
-
Leu
TAA
[ENA]
¡û
>W1610011942
AOHX01000026
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
433645
433560
-
Leu
TAA
[ENA]
¡û
>W1610012027
AOHZ01000034
Euryarchaeota
Natronolimnohabitans innermongolicus JCM 12255 [AOHZ]
39721
39636
-
Leu
TAA
[ENA]
¡û
>W1610012105
AOIA01000167
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
63998
63915
-
Leu
TAA
[ENA]
¡û
>W1610012123
AOIB01000014
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
90019
89934
-
Leu
TAA
[ENA]
¡û
>W1610012164
AOIC01000048
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
6532
6617
+
Leu
TAA
[ENA]
¡û
>W1610012221
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
79789
79704
-
Leu
TAA
[ENA]
¡û
>W1610012284
AOII01000020
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
33812
33896
+
Leu
TAA
[ENA]
¡û
>W1610012347
AOIJ01000055
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
66891
66806
-
Leu
TAA
[ENA]
¡û
>W1610012398
AOIK01000035
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
317262
317177
-
Leu
TAA
[ENA]
¡û
>W1610012441
AOIL01000049
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
184568
184651
+
Leu
TAA
[ENA]
¡û
>W1610012485
AOIM01000036
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
29744
29829
+
Leu
TAA
[ENA]
¡û
>W1610012537
AOIN01000100
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
14191
14106
-
Leu
TAA
[ENA]
¡û
>W1610012565
AOIO01000034
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
198982
198897
-
Leu
TAA
[ENA]
¡û
>W1610012596
AOIP01000015
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
391995
391912
-
Leu
TAA
[ENA]
¡û
>W1610012741
AOIS01000058
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
43907
43992
+
Leu
TAA
[ENA]
¡û
>W1610012759
AOIT01000010
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
55857
55772
-
Leu
TAA
[ENA]
¡û
>W1610014429
AOLZ01000042
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
129869
129956
+
Leu
TAA
[ENA]
¡û
>W1610014457
AOMA01000063
Euryarchaeota
Halobiforma nitratireducens JCM 10879 [AOMA]
85593
85680
+
Leu
TAA
[ENA]
¡û
>W1610046859
BBCV01000030
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
7510
7425
-
Leu
TAA
[ENA]
¡û
>W1610082983
CBMA010000025
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
148284
148200
-
Leu
TAA
[ENA]
¡û
>W1610083009
CBMB010000003
Euryarchaeota
Halopiger goleimassiliensis IIH3 [CBMB]
359817
359902
+
Leu
TAA
[ENA]
¡û
>W1610671375
LKCV01000085
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
12996
12911
-
Leu
TAA
[ENA]
¡û
>W1610671391
LKCV01000309
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
172
87
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK