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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59264 (43 seq.)
>C171108215
CP020457
Bacillota
Lactobacillus amylolyticus L6 [CP020457]
386812
386727
-
Leu
CAG
-
¡û
>W131144790
AQFR01000162
Bacillota
Lactobacillus intestinalis ASF360 [AQFR]
7332
7418
+
Leu
CAG
[ENA]
¡û
>WENV181286858
OFGX01000051
[OFGX] mouse gut metagenome; faeces
73569
73652
+
Leu
CAG
[ENA]
¢þ
>WENV181289414
OFHA01000055
[OFHA] mouse gut metagenome; faeces
20851
20768
-
Leu
CAG
[ENA]
¢þ
>W141228451
BALY01000008
Bacillota
Lactobacillus hamsteri JCM 6256 [BALY]
11480
11395
-
Leu
CAG
[ENA]
¡û
>W141244136
CAKC01000048
Bacillota
Lactobacillus gigeriorum CRBIP 24.85 [CAKC]
27983
28066
+
Leu
CAG
[ENA]
¡û
>W141244182
CAKD01000023
Bacillota
Lactobacillus pasteurii CRBIP 24.76 [CAKD]
301409
301492
+
Leu
CAG
[ENA]
¡û
>C181178893
CP029476
Bacillota
Lactobacillus apis ESL0185 [CP029476]
1104726
1104810
+
Leu
CAG
-
¡û
>C181178948
CP029477
Bacillota
Lactobacillus kullabergensis ESL0186 [CP029477]
1344187
1344270
+
Leu
CAG
-
¡û
>C181179896
CP029544
Bacillota
Lactobacillus helsingborgensis ESL0183 [CP029544]
1246639
1246724
+
Leu
CAG
-
¡û
>C191081409
CP031835
Bacillota
Lactobacillus amylolyticus L5 [CP031835]
389079
388994
-
Leu
CAG
-
¡û
>W1911160220
NPNG01000004
Bacillota
Lactobacillus bombicola H70-3 [NPNG]
13868
13785
-
Leu
CAG
[ENA]
¡û
>W1911160248
NPNH01000001
Bacillota
Lactobacillus panisapium 2·î3Æü [NPNH]
476904
476987
+
Leu
CAG
[ENA]
¡û
>W1911631525
PUFF01000036
Bacillota
Lactobacillus amylolyticus DSM 11664 [PUFF]
176312
176397
+
Leu
CAG
[ENA]
¡û
>W1911632269
PUFQ01000021
Bacillota
Lactobacillus pasteurii DSM 23907 [PUFQ]
15634
15551
-
Leu
CAG
[ENA]
¡û
>W1911702440
QOCT01000005
Bacillota
Lactobacillus bombicola L5-31 [QOCT]
166330
166413
+
Leu
CAG
[ENA]
¡û
>W1911702520
QOCU01000002
Bacillota
Lactobacillus bombicola BI-4G [QOCU]
14799
14716
-
Leu
CAG
[ENA]
¡û
>W1911702575
QOCV01000015
Bacillota
Lactobacillus bombicola OCC3 [QOCV]
72479
72562
+
Leu
CAG
[ENA]
¡û
>W1810058644
PDKP01000001
Bacillota
Lactobacillus apis LMG 26964 [PDKP]
776437
776523
+
Leu
CAG
[ENA]
¡û
>W1810252679
PQGL01000012
Bacillota
Lactobacillus sp. HT06-2 [PQGL]
26602
26517
-
Leu
CAG
[ENA]
¡û
>W1810603474
QGLG01000002
Bacillota
Lactobacillus melliventris ESL0184 [QGLG]
1006653
1006736
+
Leu
CAG
[ENA]
¡û
>C151053178
CP009531
Bacillota
Lactobacillus sp. wkB8 [CP009531]
1290914
1290999
+
Leu
CAG
[Ensembl]
¡û
>W10116613
ADNY01000013
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
174656
174741
+
Leu
CAG
[ENA]
¡û
>W1511347209
JRJB01000007
Bacillota
Lactobacillus sp. wkB10 [JRJB]
61759
61673
-
Leu
CAG
[ENA]
¡û
>W11121282
ADNY01000013
Bacillota
Lactobacillus amylolyticus DSM 11664 [ADNY]
174656
174741
+
Leu
CAG
[ENA]
¡û
>W1511501586
JXBY01000020
Bacillota
Lactobacillus kullabergensis Biut2 [JXBY]
189102
189188
+
Leu
CAG
[ENA]
¡û
>W1511505350
JXJR01000008
Bacillota
Lactobacillus helsingborgensis Bma5 [JXJR]
56766
56851
+
Leu
CAG
[ENA]
¡û
>W1511505437
JXLG01000005
Bacillota
Lactobacillus apis Hma11 [JXLG]
722683
722769
+
Leu
CAG
[ENA]
¡û
>W1511505486
JXLH01000015
Bacillota
Lactobacillus kimbladii Hma2 [JXLH]
212065
212148
+
Leu
CAG
[ENA]
¡û
>W1511505536
JXLI01000010
Bacillota
Lactobacillus melliventris Hma8 [JXLI]
529695
529778
+
Leu
CAG
[ENA]
¡û
>W1610032324
AYZN01000001
Bacillota
Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 [AYZN]
11950
11867
-
Leu
CAG
[ENA]
¡û
>W1610032366
AYZO01000011
Bacillota
Lactobacillus gigeriorum DSM 23908 = CRBIP 24.85 [AYZO]
17219
17136
-
Leu
CAG
[ENA]
¡û
>W1610035580
AZEP01000008
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
11118
11033
-
Leu
CAG
[ENA]
¡û
>W1610036706
AZFM01000004
Bacillota
Lactobacillus kalixensis DSM 16043 [AZFM]
94191
94276
+
Leu
CAG
[ENA]
¡û
>W1610037841
AZGI01000059
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
11536
11451
-
Leu
CAG
[ENA]
¡û
>W1610038077
AZGN01000019
Bacillota
Lactobacillus intestinalis DSM 6629 [AZGN]
61617
61531
-
Leu
CAG
[ENA]
¡û
>W1610514767
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
18913
18827
-
Leu
CAG
[ENA]
¡û
>W1710032619
AZEP01000008
Bacillota
Lactobacillus amylolyticus DSM 11664 [AZEP]
11118
11033
-
Leu
CAG
[ENA]
¡û
>W1710033745
AZFM01000004
Bacillota
Lactobacillus kalixensis DSM 16043 [AZFM]
94191
94276
+
Leu
CAG
[ENA]
¡û
>W1710034880
AZGI01000059
Bacillota
Lactobacillus hamsteri DSM 5661 = JCM 6256 [AZGI]
11536
11451
-
Leu
CAG
[ENA]
¡û
>W1710035069
AZGN01000019
Bacillota
Lactobacillus intestinalis DSM 6629 [AZGN]
61617
61531
-
Leu
CAG
[ENA]
¡û
>W1710500457
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
18913
18827
-
Leu
CAG
[ENA]
¡û
>W1710559278
FOMN01000003
Bacillota
Lactobacillus bombicola [FOMN]
177409
177492
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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