This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59268 (94 seq.)
>W1710991625
LPXV01000016
Bacillota
Levilactobacillus brevis [LPXV]
16797
16882
+
Leu
CAG
[ENA]
¡û
>W1711005245
LQNG01000002
Bacillota
Levilactobacillus brevis [LQNG]
72954
72869
-
Leu
CAG
[ENA]
¡û
>W131184923
ARTH01000082
Bacillota
Levilactobacillus parabrevis ATCC 53295 [ARTH]
18028
17941
-
Leu
CAG
[ENA]
¡û
>W1711373185
MDUA01000001
Bacillota
Levilactobacillus brevis [MDUA]
56287
56202
-
Leu
CAG
[ENA]
¡û
>W1711748633
MULL01000001
Bacillota
Levilactobacillus brevis [MULL]
1469778
1469693
-
Leu
CAG
[ENA]
¡û
>W1711903217
MZMW01000004
Bacillota
Levilactobacillus brevis [MZMW]
296938
296853
-
Leu
CAG
[ENA]
¡û
>W1712056391
NFZZ01000008
Bacillota
Levilactobacillus brevis [NFZZ]
118589
118504
-
Leu
CAG
[ENA]
¡û
>C171037679
CP015338
Bacillota
Levilactobacillus brevis 100D8 [CP015338]
15791
15706
-
Leu
CAG
-
¡û
>C171051216
CP016797
Bacillota
Levilactobacillus brevis TMW 1.2112 [CP016797]
942060
942145
+
Leu
CAG
-
¡û
>C171086152
CP018906
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [CP018906]
1722630
1722545
-
Leu
CAG
-
¡û
>C171099178
CP019734
Bacillota
Levilactobacillus brevis TMW 1.2108 [CP019734]
1690375
1690290
-
Leu
CAG
-
¡û
>C171099240
CP019743
Bacillota
Levilactobacillus brevis TMW 1.2111 [CP019743]
1694508
1694423
-
Leu
CAG
-
¡û
>C171099274
CP019750
Bacillota
Levilactobacillus brevis TMW 1.2113 [CP019750]
991459
991544
+
Leu
CAG
-
¡û
>C171119557
CP021479
Bacillota
Levilactobacillus brevis SRCM101174 [CP021479]
1583344
1583259
-
Leu
CAG
-
¡û
>C171121239
CP021674
Bacillota
Levilactobacillus brevis SRCM101106 [CP021674]
1499272
1499187
-
Leu
CAG
-
¡û
>C011320
CP000416
Bacillota
Levilactobacillus brevis ATCC 367 [CP000416]
1482666
1482583
-
Leu
CAG
[Ensembl]
¡û
>W141086241
AUTD01000019
Bacillota
Levilactobacillus brevis EW [AUTD]
16797
16882
+
Leu
CAG
[ENA]
¡û
>W141146271
AWVK01000028
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AWVK]
33118
33033
-
Leu
CAG
[ENA]
¡û
>W141226554
BAKI01000001
Bacillota
Lentilactobacillus farraginis JCM 14108 [BAKI]
150018
150103
+
Leu
CAG
[ENA]
¡û
>W141279941
JAGR01000001
Bacillota
Levilactobacillus brevis AG48 [JAGR]
2058798
2058883
+
Leu
CAG
[ENA]
¡û
>WENV183511567
OMJG01000792
[OMJG] food metagenome; Cotija cheese
17986
18071
+
Leu
CAG
[ENA]
¢þ
>WENV170659489
JXWR01006841
[JXWR] soil metagenome; rice field; ambient CO2
157
72
-
Leu
CAG
[ENA]
¢þ
>C181052568
CP021456
Bacillota
Levilactobacillus brevis ZLB004 [CP021456]
1665786
1665701
-
Leu
CAG
-
¡û
>C181103376
CP024635
Bacillota
Levilactobacillus brevis BDGP6 [CP024635]
2749106
2749191
+
Leu
CAG
-
¡û
>C181211348
LS483405
Bacillota
Levilactobacillus brevis NCTC13768 [LS483405]
1553319
1553234
-
Leu
CAG
-
¡û
>C191074011
CP031169
Bacillota
Levilactobacillus brevis UCCLBBS124 [CP031169]
1676939
1676854
-
Leu
CAG
-
¡û
>C191074071
CP031174
Bacillota
Levilactobacillus brevis UCCLB556 [CP031174]
1522914
1522829
-
Leu
CAG
-
¡û
>C191074132
CP031182
Bacillota
Levilactobacillus brevis UCCLB95 [CP031182]
1472017
1471932
-
Leu
CAG
-
¡û
>C191074192
CP031185
Bacillota
Levilactobacillus brevis SA-C12 [CP031185]
1603512
1603427
-
Leu
CAG
-
¡û
>C191074255
CP031198
Bacillota
Levilactobacillus brevis UCCLBBS449 [CP031198]
1629317
1629232
-
Leu
CAG
-
¡û
>C191074313
CP031208
Bacillota
Levilactobacillus brevis UCCLB521 [CP031208]
1450073
1449988
-
Leu
CAG
-
¡û
>C191114461
CP033885
Bacillota
Levilactobacillus brevis LMT1-73 [CP033885]
2098826
2098741
-
Leu
CAG
-
¡û
>W09122557
ACGG01000118
Bacillota
Lentilactobacillus hilgardii subsp. gravesensis ATCC 27305 [ACGG]
354603
354518
-
Leu
CAG
[ENA]
¡û
>W09122611
ACGH01000132
Bacillota
Lentilactobacillus buchneri ATCC 11577 [ACGH]
248757
248672
-
Leu
CAG
[ENA]
¡û
>W09122973
ACGP01000189
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [ACGP]
84754
84669
-
Leu
CAG
[ENA]
¡û
>W1910067169
BEXA01000002
Bacillota
Lentilactobacillus kosonis NBRC111893 [BEXA]
177299
177384
+
Leu
CAG
[ENA]
¡û
>W1910181328
BJLW01000057
Bacillota
Levilactobacillus brevis NBRC 3960 [BJLW]
1359
1444
+
Leu
CAG
[ENA]
¡û
>W1910181430
BJLZ01000027
Bacillota
Levilactobacillus brevis NBRC 12005 [BJLZ]
5215
5130
-
Leu
CAG
[ENA]
¡û
>W1910182189
BJMR01000038
Bacillota
Levilactobacillus brevis NBRC 13110 [BJMR]
171
86
-
Leu
CAG
[ENA]
¡û
>W1910230925
FPCL01000079
Bacillota
Levilactobacillus brevis [FPCL]
15646
15731
+
Leu
CAG
[ENA]
¡û
>W1910230987
FPCM01000063
Bacillota
Levilactobacillus brevis [FPCM]
9770
9855
+
Leu
CAG
[ENA]
¡û
>W1910231038
FPCN01000043
Bacillota
Levilactobacillus brevis [FPCN]
15646
15731
+
Leu
CAG
[ENA]
¡û
>W1910231105
FPCO01000087
Bacillota
Levilactobacillus brevis [FPCO]
15646
15731
+
Leu
CAG
[ENA]
¡û
>W1910231165
FPCQ01000082
Bacillota
Levilactobacillus brevis [FPCQ]
15646
15731
+
Leu
CAG
[ENA]
¡û
>W1910231218
FPCR01000055
Bacillota
Levilactobacillus brevis [FPCR]
15646
15731
+
Leu
CAG
[ENA]
¡û
>W1910922779
NIGI01000072
Bacillota
Levilactobacillus brevis SF15B [NIGI]
19036
18951
-
Leu
CAG
[ENA]
¡û
>W1910922840
NIGJ01000038
Bacillota
Levilactobacillus brevis SF9B [NIGJ]
39978
39893
-
Leu
CAG
[ENA]
¡û
>W1910922891
NIGK01000009
Bacillota
Levilactobacillus brevis ZG1 [NIGK]
41898
41813
-
Leu
CAG
[ENA]
¡û
>W1911386175
NVYO01000001
Bacillota
Levilactobacillus brevis D7 [NVYO]
1753510
1753425
-
Leu
CAG
[ENA]
¡û
>W1911551307
OVSN01000006
Bacillota
Lentilactobacillus raoultii Marseille-P4006 [OVSN]
14352
14438
+
Leu
CAG
[ENA]
¡û
>W1911632288
PUFR01000056
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [PUFR]
37304
37389
+
Leu
CAG
[ENA]
¡û
>W1810000917
BEWS01000016
Bacillota
Levilactobacillus brevis NBRC 3345 [BEWS]
41829
41744
-
Leu
CAG
[ENA]
¡û
>W1810476120
QAJZ01000029
Bacillota
Levilactobacillus brevis DM9218 [QAJZ]
18400
18485
+
Leu
CAG
[ENA]
¡û
>W1810489249
QAZW01000039
Bacillota
Levilactobacillus brevis DS1_5 [QAZW]
296
211
-
Leu
CAG
[ENA]
¡û
>W1810699075
QMCB01000031
Bacillota
Levilactobacillus brevis TUCO-5E [QMCB]
4526
4441
-
Leu
CAG
[ENA]
¡û
>W1810705764
QMJO01000019
Bacillota
Levilactobacillus brevis KMB_615 [QMJO]
8328
8413
+
Leu
CAG
[ENA]
¡û
>W1810706042
QMJT01000041
Bacillota
Levilactobacillus brevis KMB_620 [QMJT]
281
196
-
Leu
CAG
[ENA]
¡û
>W1810780435
QQPA01000079
Bacillota
Levilactobacillus brevis WIKIM12 [QQPA]
96649
96564
-
Leu
CAG
[ENA]
¡û
>C151089877
CP012033
Bacillota
Levilactobacillus koreensis 26-25 [CP012033]
2430169
2430082
-
Leu
CAG
[Ensembl]
¡û
>W1510013592
BBOW01000079
Bacillota
Levilactobacillus brevis WK12 [BBOW]
96649
96564
-
Leu
CAG
[ENA]
¡û
>W1511270460
JOKA01000026
Bacillota
Levilactobacillus brevis DmCS_003 [JOKA]
18027
18112
+
Leu
CAG
[ENA]
¡û
>W1511393341
JTAL01000002
Bacillota
Lentilactobacillus curieae CCTCC M 2011381 [JTAL]
433871
433956
+
Leu
CAG
[ENA]
¡û
>W1511501802
JXCD01000038
Bacillota
Levilactobacillus brevis 15f [JXCD]
3409
3324
-
Leu
CAG
[ENA]
¡û
>W1511512302
JXUE01000015
Bacillota
Levilactobacillus brevis TMW 1.6 [JXUE]
2419455
2419370
-
Leu
CAG
[ENA]
¡û
>W1511512348
JXUF01000002
Bacillota
Levilactobacillus brevis TMW 1.313 [JXUF]
2512533
2512448
-
Leu
CAG
[ENA]
¡û
>W1511512426
JXUG01000021
Bacillota
Levilactobacillus brevis TMW 1.465 [JXUG]
104693
104608
-
Leu
CAG
[ENA]
¡û
>W1511591592
LBHR01000099
Bacillota
Levilactobacillus brevis 47f [LBHR]
1114
1199
+
Leu
CAG
[ENA]
¡û
>C161003688
CP005977
Bacillota
Levilactobacillus brevis BSO 464 [CP005977]
1032154
1032069
-
Leu
CAG
-
¡û
>C161086953
CP015398
Bacillota
Levilactobacillus brevis NPS-QW-145 [CP015398]
1889096
1889011
-
Leu
CAG
-
¡û
>W121009512
AGEY01000008
Bacillota
Lentilactobacillus parafarraginis F0439 [AGEY]
47134
47221
+
Leu
CAG
[ENA]
¡û
>W1610032970
AZCP01000001
Bacillota
Levilactobacillus brevis ATCC 14869 = DSM 20054 [AZCP]
72183
72268
+
Leu
CAG
[ENA]
¡û
>W1610033482
AZCZ01000015
Bacillota
Levilactobacillus parabrevis ATCC 53295 [AZCZ]
17530
17443
-
Leu
CAG
[ENA]
¡û
>W1610033772
AZDF01000004
Bacillota
Lentilactobacillus hilgardii DSM 20176 = ATCC 8290 [AZDF]
36451
36536
+
Leu
CAG
[ENA]
¡û
>W1610034245
AZDP01000055
Bacillota
Levilactobacillus koreensis JCM 16448 [AZDP]
4120
4207
+
Leu
CAG
[ENA]
¡û
>W1610035998
AZEY01000090
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
202941
203026
+
Leu
CAG
[ENA]
¡û
>W1610036973
AZFS01000003
Bacillota
Levilactobacillus hammesii DSM 16381 [AZFS]
10478
10391
-
Leu
CAG
[ENA]
¡û
>W1610037302
AZFY01000034
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
150104
150189
+
Leu
CAG
[ENA]
¡û
>W1610037383
AZFZ01000033
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
17462
17548
+
Leu
CAG
[ENA]
¡û
>W1610044624
BBAR01000033
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
14153
14067
-
Leu
CAG
[ENA]
¡û
>C131000212
AP012167
Bacillota
Levilactobacillus brevis KB290 [AP012167]
1472563
1472478
-
Leu
CAG
[Ensembl]
¡û
>W1610529373
JQCA01000126
Bacillota
Levilactobacillus paucivorans [JQCA]
18160
18247
+
Leu
CAG
[ENA]
¡û
>W1610529751
JQCI01000015
Bacillota
Levilactobacillus parabrevis [JQCI]
44124
44211
+
Leu
CAG
[ENA]
¡û
>W1610585911
LDEI01000001
Bacillota
Levilactobacillus brevis [LDEI]
236725
236640
-
Leu
CAG
[ENA]
¡û
>W1610855895
LQNG01000002
Bacillota
Levilactobacillus brevis [LQNG]
72954
72869
-
Leu
CAG
[ENA]
¡û
>W1710031372
AZDP01000055
Bacillota
Levilactobacillus koreensis JCM 16448 [AZDP]
4120
4207
+
Leu
CAG
[ENA]
¡û
>W1710033037
AZEY01000090
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
202941
203026
+
Leu
CAG
[ENA]
¡û
>W1710034012
AZFS01000003
Bacillota
Levilactobacillus hammesii DSM 16381 [AZFS]
10478
10391
-
Leu
CAG
[ENA]
¡û
>W1710034341
AZFY01000034
Bacillota
Lentilactobacillus farraginis DSM 18382 = JCM 14108 [AZFY]
150104
150189
+
Leu
CAG
[ENA]
¡û
>W1710034422
AZFZ01000033
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
17462
17548
+
Leu
CAG
[ENA]
¡û
>W1710041722
BBAR01000033
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
14153
14067
-
Leu
CAG
[ENA]
¡û
>W1710630963
JQCA01000126
Bacillota
Levilactobacillus paucivorans [JQCA]
18160
18247
+
Leu
CAG
[ENA]
¡û
>W1710631341
JQCI01000015
Bacillota
Levilactobacillus parabrevis [JQCI]
44124
44211
+
Leu
CAG
[ENA]
¡û
>W1710705191
LDEI01000001
Bacillota
Levilactobacillus brevis [LDEI]
236725
236640
-
Leu
CAG
[ENA]
¡û
>W1710735896
LGIX01000054
Bacillota
Levilactobacillus brevis [LGIX]
3718
3633
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK