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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59290 (11 seq.)
>A171004019
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339184
339100
-
Leu
TAG
-
¡û
>A171007315
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716276
1716360
+
Leu
TAG
-
¡û
>A171007345
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
965044
965128
+
Leu
TAG
-
¡û
>A171007397
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096812
2096896
+
Leu
TAG
-
¡û
>A171007665
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2131373
2131457
+
Leu
TAG
-
¡û
>WENV170021463
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1849
1765
-
Leu
TAG
[ENA]
¢þ
>WENV170677321
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4676
4760
+
Leu
TAG
[ENA]
¢þ
>W1610006215
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13579
13495
-
Leu
TAG
[ENA]
¡û
>W1610011023
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
50000
49916
-
Leu
TAG
[ENA]
¡û
>W1610049153
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
96122
96206
+
Leu
TAG
[ENA]
¡û
>W1610613875
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4676
4760
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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