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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59301 (25 seq.)
>W1711227878
LXWA01000044
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
24375
24461
+
Leu
CAA
[ENA]
¡û
>C171131067
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
2128817
2128903
+
Leu
CAA
-
¡û
>W131180587
ARNF01000082
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
105977
106063
+
Leu
CAA
[ENA]
¡û
>C015831
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1060551
1060465
-
Leu
CAA
[Ensembl]
¡û
>C015971
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
1887509
1887595
+
Leu
CAA
[Ensembl]
¡û
>C017907
CP000713
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [CP000713]
2380096
2380182
+
Leu
CAA
[Ensembl]
¡û
>w003192
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
777518
777604
+
Leu
CAA
[ENA]
¡û
>C08007228
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1060551
1060468
-
Leu
CAA
[Ensembl]
¡û
>WENV170000497
AFAP01003112
[AFAP] human metagenome; nasopharyngeal aspirates
29
115
+
Leu
CAA
[ENA]
¢þ
>C181056021
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
584933
585019
+
Leu
CAA
-
¡û
>C181185219
CP029789
Gammaproteobacteria
Psychrobacter sp. YP14 [CP029789]
2199021
2199107
+
Leu
CAA
-
¡û
>W09105562
AAPX01000003
Gammaproteobacteria
Psychrobacter sp. PRwf-1 [AAPX]
101049
100963
-
Leu
CAA
[ENA]
¡û
>W141701350
JMKP01000017
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
31721
31635
-
Leu
CAA
[ENA]
¡û
>W1910372472
FUGD01000052
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
21158
21072
-
Leu
CAA
[ENA]
¡û
>W1910372541
FUGE01000233
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
4547
4633
+
Leu
CAA
[ENA]
¡û
>W1910891778
NEXU01000067
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
31258
31172
-
Leu
CAA
[ENA]
¡û
>W1911397580
NWFK02000001
Gammaproteobacteria
Psychrobacter sp. FDAARGOS_221 [NWFK]
2489129
2489043
-
Leu
CAA
[ENA]
¡û
>W1810157380
PJBX01000161
Gammaproteobacteria
Psychrobacter sp. Sarcosine-02u-2 [PJBX]
23751
23837
+
Leu
CAA
[ENA]
¡û
>C151097213
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
613639
613725
+
Leu
CAA
-
¡û
>W11163490
AFHU01000172
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
35637
35723
+
Leu
CAA
[ENA]
¡û
>C161042762
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
998215
998129
-
Leu
CAA
-
¡û
>W1610071738
BCUH01000013
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
31831
31917
+
Leu
CAA
[ENA]
¡û
>C131017381
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
1868238
1868324
+
Leu
CAA
[Ensembl]
¡û
>W1611011842
LXWA01000044
Gammaproteobacteria
Psychrobacter sp. SHUES1 [LXWA]
24375
24461
+
Leu
CAA
[ENA]
¡û
>W1710068940
BCUH01000013
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
31831
31917
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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