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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59303 (110 seq.)
>W1711027094
LRDC01000029
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
128348
128262
-
Leu
GAG
[ENA]
¡û
>W1711174324
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
75139
75225
+
Leu
GAG
[ENA]
¡û
>W1711326682
MBFW01000040
Gammaproteobacteria
Shewanella algae [MBFW]
110773
110687
-
Leu
GAG
[ENA]
¡û
>W1711360864
MDKA01000009
Gammaproteobacteria
Shewanella algae [MDKA]
85812
85726
-
Leu
GAG
[ENA]
¡û
>W1711621611
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
735248
735334
+
Leu
GAG
[ENA]
¡û
>W1711934399
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
164342
164256
-
Leu
GAG
[ENA]
¡û
>W1712080452
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
46843
46757
-
Leu
GAG
[ENA]
¡û
>WENV013578
AACY020373710
Marine microbial communities from Global Ocean Sampling (GOS)
2625
2711
+
Leu
GAG
[ENA]
>C019775
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1158691
1158777
+
Leu
GAG
[Ensembl]
¡û
>C020677
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3802001
3801915
-
Leu
GAG
[Ensembl]
¡û
>C020925
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
1144177
1144263
+
Leu
GAG
[Ensembl]
¡û
>C021952
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
1153446
1153532
+
Leu
GAG
[Ensembl]
¡û
>C022224
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1199787
1199873
+
Leu
GAG
[Ensembl]
¡û
>C022326
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1192179
1192265
+
Leu
GAG
[Ensembl]
¡û
>C022422
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1254540
1254626
+
Leu
GAG
[Ensembl]
¡û
>C022525
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1212941
1213027
+
Leu
GAG
[Ensembl]
¡û
>C022926
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1245541
1245627
+
Leu
GAG
[Ensembl]
¡û
>C023289
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3297573
3297487
-
Leu
GAG
[Ensembl]
¡û
>w026349
ABAU01000115
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
708
794
+
Leu
GAG
[ENA]
¡û
>w022914
AAWY01000062
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
15513
15430
-
Leu
GAG
[ENA]
¡û
>w007687
AAIU01000035
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
22005
21922
-
Leu
GAG
[ENA]
¡û
>WENV180311058
OBJT01100906
[OBJT] soil metagenome; soil
119
33
-
Leu
GAG
[ENA]
¢þ
>W141171256
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
12696
12610
-
Leu
GAG
[ENA]
¡û
>C08008662
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3914763
3914680
-
Leu
GAG
[Ensembl]
¡û
>W141227777
BALL01000012
Gammaproteobacteria
Shewanella algae JCM 14758 [BALL]
67453
67539
+
Leu
GAG
[ENA]
¡û
>W141227825
BALM01000001
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
110139
110225
+
Leu
GAG
[ENA]
¡û
>W141227907
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
77824
77910
+
Leu
GAG
[ENA]
¡û
>W141227950
BALO01000008
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
107933
108019
+
Leu
GAG
[ENA]
¡û
>C08008766
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4037679
4037596
-
Leu
GAG
[Ensembl]
¡û
>W141276212
JADP01000021
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
14486
14400
-
Leu
GAG
[ENA]
¡û
>W141277731
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
40168
40082
-
Leu
GAG
[ENA]
¡û
>WENV170022281
BCQK01003597
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2468
2382
-
Leu
GAG
[ENA]
¢þ
>WENV170022818
BCQK01054738
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
591
677
+
Leu
GAG
[ENA]
¢þ
>WENV170023068
BCQK01116531
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
375
461
+
Leu
GAG
[ENA]
¢þ
>WENV020706
AACY020557411
Marine microbial communities from Global Ocean Sampling (GOS)
5554
5640
+
Leu
GAG
[ENA]
>C181016850
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4405464
4405378
-
Leu
GAG
-
¡û
>C181057587
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2333982
2333896
-
Leu
GAG
-
¡û
>C181062992
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3575079
3574993
-
Leu
GAG
-
¡û
>C181075011
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3124586
3124672
+
Leu
GAG
-
¡û
>C181164496
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3049459
3049545
+
Leu
GAG
-
¡û
>C181165414
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3759851
3759937
+
Leu
GAG
-
¡û
>C181167928
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3632772
3632686
-
Leu
GAG
-
¡û
>C191015492
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
2860949
2861035
+
Leu
GAG
-
¡û
>C191017565
CP020373
Gammaproteobacteria
Shewanella khirikhana TH2012 [CP020373]
565940
566026
+
Leu
GAG
-
¡û
>W141520041
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
68146
68232
+
Leu
GAG
[ENA]
¡û
>C191107811
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
1570118
1570204
+
Leu
GAG
-
¡û
>C191117183
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1525840
1525926
+
Leu
GAG
-
¡û
>C191173197
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
3437815
3437901
+
Leu
GAG
-
¡û
>C191185875
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
3486801
3486715
-
Leu
GAG
-
¡û
>C191187041
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
1412294
1412380
+
Leu
GAG
-
¡û
>C191205224
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3257925
3258011
+
Leu
GAG
-
¡û
>C191206471
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3736467
3736381
-
Leu
GAG
-
¡û
>W09102829
AAIN01000043
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
7197
7283
+
Leu
GAG
[ENA]
¡û
>W09103152
AAIV01000048
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
967
1053
+
Leu
GAG
[ENA]
¡û
>W09103961
AALB01000061
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
16820
16734
-
Leu
GAG
[ENA]
¡û
>W09104080
AALH01000075
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
10930
10844
-
Leu
GAG
[ENA]
¡û
>W09104292
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
19671
19757
+
Leu
GAG
[ENA]
¡û
>W09104627
AALX01000062
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
986
1072
+
Leu
GAG
[ENA]
¡û
>W141802008
JPEO01000010
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
53172
53258
+
Leu
GAG
[ENA]
¡û
>W1910617450
LIRM01000024
Gammaproteobacteria
Shewanella algae MN-01 [LIRM]
32437
32523
+
Leu
GAG
[ENA]
¡û
>W1910645031
LVCY01000023
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
33910
33996
+
Leu
GAG
[ENA]
¡û
>W1910645124
LVDH01000005
Gammaproteobacteria
Shewanella algae AC [LVDH]
110727
110813
+
Leu
GAG
[ENA]
¡û
>W1910645198
LVDK01000012
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
108491
108577
+
Leu
GAG
[ENA]
¡û
>W1910645250
LVDU01000002
Gammaproteobacteria
Shewanella algae YHL [LVDU]
810025
809939
-
Leu
GAG
[ENA]
¡û
>C09109148
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1323139
1323225
+
Leu
GAG
[Ensembl]
¡û
>W1910905590
NGVS01000028
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
112995
113081
+
Leu
GAG
[ENA]
¡û
>W1910913786
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
22694
22608
-
Leu
GAG
[ENA]
¡û
>W1910927044
NIJK01000009
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
78014
77928
-
Leu
GAG
[ENA]
¡û
>W1910927161
NIJL01000017
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
74200
74286
+
Leu
GAG
[ENA]
¡û
>W1910927239
NIJM01000008
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
54161
54247
+
Leu
GAG
[ENA]
¡û
>W1810073435
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
244821
244735
-
Leu
GAG
[ENA]
¡û
>W1810155305
PJAP01000681
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
1823
1909
+
Leu
GAG
[ENA]
¡û
>W1810157740
PJCD01000002
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
266313
266227
-
Leu
GAG
[ENA]
¡û
>W1810157881
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
2071487
2071401
-
Leu
GAG
[ENA]
¡û
>W1810423006
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2449517
2449431
-
Leu
GAG
[ENA]
¡û
>W1810585881
QFDC01000021
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
36629
36543
-
Leu
GAG
[ENA]
¡û
>W1810587740
QFLG01000020
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
78666
78580
-
Leu
GAG
[ENA]
¡û
>W1810671676
QJSY01000015
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
54455
54541
+
Leu
GAG
[ENA]
¡û
>W1810721536
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
64127
64213
+
Leu
GAG
[ENA]
¡û
>W1810786576
QRCS01000015
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
166526
166440
-
Leu
GAG
[ENA]
¡û
>W1510077669
CDQH01000015
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
40216
40302
+
Leu
GAG
[ENA]
¡û
>W10119030
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
287622
287536
-
Leu
GAG
[ENA]
¡û
>W10126055
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
492224
492138
-
Leu
GAG
[ENA]
¡û
>W10126359
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
319514
319600
+
Leu
GAG
[ENA]
¡û
>W1511306521
JPMA01000010
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
44379
44293
-
Leu
GAG
[ENA]
¡û
>C11119381
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1335593
1335679
+
Leu
GAG
[Ensembl]
¡û
>C11119523
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3896433
3896347
-
Leu
GAG
[Ensembl]
¡û
>C11119621
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
3985643
3985557
-
Leu
GAG
[Ensembl]
¡û
>W1511403531
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1105800
1105886
+
Leu
GAG
[ENA]
¡û
>C11121558
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3376266
3376180
-
Leu
GAG
[Ensembl]
¡û
>W11125202
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
287622
287536
-
Leu
GAG
[ENA]
¡û
>W1511477917
JWGX01000011
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
54168
54254
+
Leu
GAG
[ENA]
¡û
>W11133316
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
492224
492138
-
Leu
GAG
[ENA]
¡û
>W11133620
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
319514
319600
+
Leu
GAG
[ENA]
¡û
>W11169882
AFOZ01000014
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
393283
393369
+
Leu
GAG
[ENA]
¡û
>W11178475
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
148612
148526
-
Leu
GAG
[ENA]
¡û
>W121103333
AKZL01000064
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
16109
16023
-
Leu
GAG
[ENA]
¡û
>W1610042101
BAXN01000014
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
108126
108212
+
Leu
GAG
[ENA]
¡û
>W1610072062
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
39212
39298
+
Leu
GAG
[ENA]
¡û
>W1610077846
BCZT01000003
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
107965
108051
+
Leu
GAG
[ENA]
¡û
>W1610617835
LGYY01000088
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
51468
51382
-
Leu
GAG
[ENA]
¡û
>W1610875206
LRDC01000029
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
128348
128262
-
Leu
GAG
[ENA]
¡û
>W1610982637
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
75139
75225
+
Leu
GAG
[ENA]
¡û
>W1710039195
BAXN01000014
Gammaproteobacteria
Shewanella sp. JCM 19057 [BAXN]
108126
108212
+
Leu
GAG
[ENA]
¡û
>W1710069264
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
39212
39298
+
Leu
GAG
[ENA]
¡û
>W1710075404
BCZT01000003
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
107965
108051
+
Leu
GAG
[ENA]
¡û
>W1710597909
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
163908
163994
+
Leu
GAG
[ENA]
¡û
>W1710692495
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
113051
113137
+
Leu
GAG
[ENA]
¡û
>W1710706698
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
369284
369198
-
Leu
GAG
[ENA]
¡û
>W1710744010
LGYY01000088
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
51468
51382
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK