This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59324 (71 seq.)
>W1710777594
LJBS01000027
Bacillota
Pediococcus acidilactici [LJBS]
721
806
+
Leu
CAA
[ENA]
¡û
>W1711005288
LQNM01000005
Bacillota
Pediococcus pentosaceus [LQNM]
82689
82604
-
Leu
CAA
[ENA]
¡û
>W1711005597
LQNQ01000060
Bacillota
Pediococcus acidilactici [LQNQ]
96706
96621
-
Leu
CAA
[ENA]
¡û
>W1711005630
LQNR01000035
Bacillota
Pediococcus acidilactici [LQNR]
46368
46283
-
Leu
CAA
[ENA]
¡û
>W1711025271
LRBW01000015
Bacillota
Pediococcus acidilactici [LRBW]
93183
93098
-
Leu
CAA
[ENA]
¡û
>W1711068946
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182075
181990
-
Leu
CAA
[ENA]
¡û
>W131146247
AQGT01000006
Bacillota
Pediococcus acidilactici D3 [AQGT]
222472
222557
+
Leu
CAA
[ENA]
¡û
>W1711258388
LYUJ01000002
Bacillota
Pediococcus acidilactici [LYUJ]
354230
354145
-
Leu
CAA
[ENA]
¡û
>W1711352478
MDDF01000101
Bacillota
Pediococcus acidilactici [MDDF]
520
435
-
Leu
CAA
[ENA]
¡û
>W131239171
BANK01000004
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
125647
125562
-
Leu
CAA
[ENA]
¡û
>C171034295
CP014933
Bacillota
Pediococcus claussenii TMW 2.53 [CP014933]
1628571
1628656
+
Leu
CAA
-
¡û
>C171034352
CP014936
Bacillota
Pediococcus claussenii TMW 2.54 [CP014936]
1626366
1626451
+
Leu
CAA
-
¡û
>C171036825
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
632243
632158
-
Leu
CAA
-
¡û
>C171083306
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1360780
1360695
-
Leu
CAA
-
¡û
>C171119613
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1342553
1342468
-
Leu
CAA
-
¡û
>C171120473
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1342562
1342477
-
Leu
CAA
-
¡û
>C171126482
CP021927
Bacillota
Pediococcus pentosaceus SRCM100194 [CP021927]
613945
614030
+
Leu
CAA
-
¡û
>C017452
CP000422
Bacillota
Pediococcus pentosaceus ATCC 25745 [CP000422]
1209779
1209696
-
Leu
CAA
[Ensembl]
¡û
>WENV180195991
OAZZ01012022
[OAZZ] human gut metagenome; faeces
13
98
+
Leu
CAA
[ENA]
¢þ
>WENV180349798
OBLO01121383
[OBLO] metagenome; feces
301
386
+
Leu
CAA
[ENA]
¢þ
>W141241965
CAHU01000005
Bacillota
Pediococcus pentosaceus IE-3 [CAHU]
123359
123274
-
Leu
CAA
[ENA]
¡û
>W141280136
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1699380
1699465
+
Leu
CAA
[ENA]
¡û
>WENV183762429
PPYE01275843
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
12909
12824
-
Leu
CAA
[ENA]
¢þ
>WENV183790393
PPYF01411284
[PPYF] human gut metagenome; stool from patient with Crohn's disease
48125
48040
-
Leu
CAA
[ENA]
¢þ
>WENV183792338
PPYF01458549
[PPYF] human gut metagenome; stool from patient with Crohn's disease
20113
20028
-
Leu
CAA
[ENA]
¢þ
>W141402966
JDVW01000007
Bacillota
Pediococcus pentosaceus CGMCC 7049 [JDVW]
123725
123640
-
Leu
CAA
[ENA]
¡û
>WENV170659536
JXWR01008737
[JXWR] soil metagenome; rice field; ambient CO2
7664
7579
-
Leu
CAA
[ENA]
¢þ
>C181042811
CP020018
Bacillota
Pediococcus pentosaceus KCCM 40703 [CP020018]
460026
459941
-
Leu
CAA
-
¡û
>C181203561
LN898144
Bacillota
Paucilactobacillus oligofermentans DSM 15707 = LMG 22743 [LN898144]
659659
659744
+
Leu
CAA
-
¡û
>C191023263
CP023008
Bacillota
Pediococcus pentosaceus SS1-3 [CP023008]
1130421
1130336
-
Leu
CAA
-
¡û
>C191035371
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1280303
1280218
-
Leu
CAA
-
¡û
>C191106197
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
787941
788026
+
Leu
CAA
-
¡û
>C191135609
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1180461
1180376
-
Leu
CAA
-
¡û
>C191135667
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1305455
1305370
-
Leu
CAA
-
¡û
>C191137799
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
674087
674172
+
Leu
CAA
-
¡û
>W09101470
AAEV01000008
Bacillota
Pediococcus pentosaceus ATCC 25745 [AAEV]
67334
67249
-
Leu
CAA
[ENA]
¡û
>W1910177838
BJEB01000011
Bacillota
Paucilactobacillus nenjiangensis 11102 [BJEB]
41222
41137
-
Leu
CAA
[ENA]
¡û
>W1910181685
BJMF01000017
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
16000
15915
-
Leu
CAA
[ENA]
¡û
>W1910373940
FUHV01000010
Bacillota
Pediococcus acidilactici S7 [FUHV]
506
591
+
Leu
CAA
[ENA]
¡û
>C141009521
CP006854
Bacillota
Pediococcus pentosaceus SL4 [CP006854]
1173725
1173640
-
Leu
CAA
[Ensembl]
¡û
>W1911696861
QNGC01000012
Bacillota
Pediococcus acidilactici GS1 [QNGC]
95054
94969
-
Leu
CAA
[ENA]
¡û
>W1911798491
QYRQ01000029
Bacillota
Pediococcus acidilactici WT [QYRQ]
95340
95255
-
Leu
CAA
[ENA]
¡û
>W1810000826
BEWQ01000002
Bacillota
Pediococcus pentosaceus NBRC 3182 [BEWQ]
704
789
+
Leu
CAA
[ENA]
¡û
>W1810049849
PCYQ01000008
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
508
593
+
Leu
CAA
[ENA]
¡û
>W10105160
ACXB01000020
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
94133
94048
-
Leu
CAA
[ENA]
¡û
>W10127355
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
657416
657331
-
Leu
CAA
[ENA]
¡û
>W11107480
ACXB01000020
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
94133
94048
-
Leu
CAA
[ENA]
¡û
>W11134843
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
657416
657331
-
Leu
CAA
[ENA]
¡û
>C121006612
CP003137
Bacillota
Pediococcus claussenii ATCC BAA-344 [CP003137]
779696
779781
+
Leu
CAA
[Ensembl]
¡û
>C161092331
CP015918
Bacillota
Pediococcus pentosaceus wikim20 [CP015918]
862041
862126
+
Leu
CAA
[Ensembl]
¡û
>W121011496
AGKB01000009
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
172038
171953
-
Leu
CAA
[ENA]
¡û
>W1610057797
BBZC01000016
Bacillota
Pediococcus pentosaceus [BBZC]
59096
59011
-
Leu
CAA
[ENA]
¡û
>W1610527728
JQAQ01000001
Bacillota
Pediococcus acidilactici [JQAQ]
607992
607907
-
Leu
CAA
[ENA]
¡û
>W1610528228
JQBA01000049
Bacillota
Limosilactobacillus ingluviei [JQBA]
6595
6510
-
Leu
CAA
[ENA]
¡û
>W1610529235
JQBX01000024
Bacillota
Pediococcus stilesii [JQBX]
736
820
+
Leu
CAA
[ENA]
¡û
>W1610529480
JQCC01000007
Bacillota
Pediococcus acidilactici [JQCC]
907
992
+
Leu
CAA
[ENA]
¡û
>W1610530175
JQCQ01000057
Bacillota
Pediococcus argentinicus [JQCQ]
3765
3679
-
Leu
CAA
[ENA]
¡û
>W1610641780
LJBS01000027
Bacillota
Pediococcus acidilactici [LJBS]
721
806
+
Leu
CAA
[ENA]
¡û
>W1610650097
LJIU01000006
Bacillota
Pediococcus pentosaceus wikim20 [LJIU]
28919
28834
-
Leu
CAA
[ENA]
¡û
>W1610855938
LQNM01000005
Bacillota
Pediococcus pentosaceus [LQNM]
82689
82604
-
Leu
CAA
[ENA]
¡û
>W1610856247
LQNQ01000060
Bacillota
Pediococcus acidilactici [LQNQ]
96706
96621
-
Leu
CAA
[ENA]
¡û
>W1610856280
LQNR01000035
Bacillota
Pediococcus acidilactici [LQNR]
46368
46283
-
Leu
CAA
[ENA]
¡û
>W1610873383
LRBW01000015
Bacillota
Pediococcus acidilactici [LRBW]
93183
93098
-
Leu
CAA
[ENA]
¡û
>W1610909516
LSFE01000003
Bacillota
Pediococcus pentosaceus [LSFE]
182075
181990
-
Leu
CAA
[ENA]
¡û
>W1611020860
LYUJ01000002
Bacillota
Pediococcus acidilactici [LYUJ]
354230
354145
-
Leu
CAA
[ENA]
¡û
>W1710054496
BBZC01000016
Bacillota
Pediococcus pentosaceus [BBZC]
59096
59011
-
Leu
CAA
[ENA]
¡û
>W1710629359
JQAQ01000001
Bacillota
Pediococcus acidilactici [JQAQ]
607992
607907
-
Leu
CAA
[ENA]
¡û
>W1710629818
JQBA01000049
Bacillota
Limosilactobacillus ingluviei [JQBA]
6595
6510
-
Leu
CAA
[ENA]
¡û
>W1710630825
JQBX01000024
Bacillota
Pediococcus stilesii [JQBX]
736
820
+
Leu
CAA
[ENA]
¡û
>W1710631070
JQCC01000007
Bacillota
Pediococcus acidilactici [JQCC]
907
992
+
Leu
CAA
[ENA]
¡û
>W1710631765
JQCQ01000057
Bacillota
Pediococcus argentinicus [JQCQ]
3765
3679
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK