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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59325 (43 seq.)
>W1710777621
LJBS01000042
Bacillota
Pediococcus acidilactici [LJBS]
34968
34885
-
Leu
CAG
[ENA]
¡û
>W1710915765
LNUM01000005
Bacillota
Pediococcus acidilactici [LNUM]
24798
24881
+
Leu
CAG
[ENA]
¡û
>W1711005567
LQNQ01000002
Bacillota
Pediococcus acidilactici [LQNQ]
24931
25014
+
Leu
CAG
[ENA]
¡û
>W1711005619
LQNR01000004
Bacillota
Pediococcus acidilactici [LQNR]
11999
12082
+
Leu
CAG
[ENA]
¡û
>W1711025259
LRBW01000002
Bacillota
Pediococcus acidilactici [LRBW]
24929
25012
+
Leu
CAG
[ENA]
¡û
>W1711258410
LYUJ01000005
Bacillota
Pediococcus acidilactici [LYUJ]
13516
13433
-
Leu
CAG
[ENA]
¡û
>W1711352470
MDDF01000007
Bacillota
Pediococcus acidilactici [MDDF]
2259
2342
+
Leu
CAG
[ENA]
¡û
>W1711585790
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
919583
919500
-
Leu
CAG
[ENA]
¡û
>C171036797
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
2110140
2110223
+
Leu
CAG
-
¡û
>C171083279
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
639361
639444
+
Leu
CAG
-
¡û
>C171119585
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
643449
643532
+
Leu
CAG
-
¡û
>C171119642
CP021487
Bacillota
Pediococcus acidilactici SRCM100313 [CP021487]
643418
643501
+
Leu
CAG
-
¡û
>C171120445
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
643451
643534
+
Leu
CAG
-
¡û
>W131239206
BANK01000022
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
19456
19539
+
Leu
CAG
[ENA]
¡û
>W141280165
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
399964
399881
-
Leu
CAG
[ENA]
¡û
>WENV183238437
OLQY01053423
[OLQY] human gut metagenome; faeces
121
204
+
Leu
CAG
[ENA]
¢þ
>WENV183762287
PPYE01275350
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
9079
9162
+
Leu
CAG
[ENA]
¢þ
>WENV183792340
PPYF01458559
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6465
6548
+
Leu
CAG
[ENA]
¢þ
>C191035343
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
646752
646835
+
Leu
CAG
-
¡û
>C191106226
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
1435685
1435602
-
Leu
CAG
-
¡û
>C191135582
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
635879
635962
+
Leu
CAG
-
¡û
>C191135639
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
739163
739246
+
Leu
CAG
-
¡û
>C191137829
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
1296072
1295989
-
Leu
CAG
-
¡û
>W1910181677
BJMF01000013
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
17776
17859
+
Leu
CAG
[ENA]
¡û
>W1910373918
FUHV01000001
Bacillota
Pediococcus acidilactici S7 [FUHV]
20179
20262
+
Leu
CAG
[ENA]
¡û
>W1911696899
QNGC01000030
Bacillota
Pediococcus acidilactici GS1 [QNGC]
100231
100148
-
Leu
CAG
[ENA]
¡û
>W1911798480
QYRQ01000021
Bacillota
Pediococcus acidilactici WT [QYRQ]
24926
25009
+
Leu
CAG
[ENA]
¡û
>W1810049822
PCYQ01000001
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
511336
511253
-
Leu
CAG
[ENA]
¡û
>W10105181
ACXB01000023
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
24927
25010
+
Leu
CAG
[ENA]
¡û
>W10127344
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
24920
25003
+
Leu
CAG
[ENA]
¡û
>W11107501
ACXB01000023
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
24927
25010
+
Leu
CAG
[ENA]
¡û
>W11134832
AEEG01000002
Bacillota
Pediococcus acidilactici DSM 20284 [AEEG]
24920
25003
+
Leu
CAG
[ENA]
¡û
>W121011486
AGKB01000006
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
107112
107195
+
Leu
CAG
[ENA]
¡û
>W1610527756
JQAQ01000007
Bacillota
Pediococcus acidilactici [JQAQ]
23540
23623
+
Leu
CAG
[ENA]
¡û
>W1610529488
JQCC01000009
Bacillota
Pediococcus acidilactici [JQCC]
18222
18305
+
Leu
CAG
[ENA]
¡û
>W1610641807
LJBS01000042
Bacillota
Pediococcus acidilactici [LJBS]
34968
34885
-
Leu
CAG
[ENA]
¡û
>W1610774004
LNUM01000005
Bacillota
Pediococcus acidilactici [LNUM]
24798
24881
+
Leu
CAG
[ENA]
¡û
>W1610856217
LQNQ01000002
Bacillota
Pediococcus acidilactici [LQNQ]
24931
25014
+
Leu
CAG
[ENA]
¡û
>W1610856269
LQNR01000004
Bacillota
Pediococcus acidilactici [LQNR]
11999
12082
+
Leu
CAG
[ENA]
¡û
>W1610873371
LRBW01000002
Bacillota
Pediococcus acidilactici [LRBW]
24929
25012
+
Leu
CAG
[ENA]
¡û
>W1611020882
LYUJ01000005
Bacillota
Pediococcus acidilactici [LYUJ]
13516
13433
-
Leu
CAG
[ENA]
¡û
>W1710629387
JQAQ01000007
Bacillota
Pediococcus acidilactici [JQAQ]
23540
23623
+
Leu
CAG
[ENA]
¡û
>W1710631078
JQCC01000009
Bacillota
Pediococcus acidilactici [JQCC]
18222
18305
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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