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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59340 (22 seq.)
>A171000701
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1344314
1344400
+
Ser
CGA
-
¡û
>A171001892
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
602091
602005
-
Ser
CGA
-
¡û
>A171003874
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1488091
1488177
+
Ser
CGA
-
¡û
>A171004062
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
721455
721369
-
Ser
CGA
-
¡û
>A171006361
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1395215
1395129
-
Ser
CGA
-
¡û
>WENV170675691
LDZQ01000157
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3658
3742
+
Ser
CGA
[ENA]
¢þ
>WENV170676002
LDZQ01001773
[LDZQ] terrestrial metagenome; oil reservoir sample I2
5
91
+
Ser
CGA
[ENA]
¢þ
>WENV170676030
LDZR01000336
[LDZR] terrestrial metagenome; oil reservoir sample K2
2814
2900
+
Ser
CGA
[ENA]
¢þ
>WENV170676318
LDZR01002239
[LDZR] terrestrial metagenome; oil reservoir sample K2
35808
35722
-
Ser
CGA
[ENA]
¢þ
>WENV170676697
LDZS01001963
[LDZS] terrestrial metagenome; oil reservoir sample K3
3840
3926
+
Ser
CGA
[ENA]
¢þ
>WENV170676742
LDZS01002103
[LDZS] terrestrial metagenome; oil reservoir sample K3
85
1
-
Ser
CGA
[ENA]
¢þ
>WENV170676746
LDZS01002112
[LDZS] terrestrial metagenome; oil reservoir sample K3
3429
3343
-
Ser
CGA
[ENA]
¢þ
>W1910200328
FJMQ01000119
Euryarchaeota
Thermococcus litoralis [FJMQ]
64394
64480
+
Ser
CGA
[ENA]
¡û
>W1910597296
LANF01000019
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
107233
107319
+
Ser
CGA
[ENA]
¡û
>W1610000722
ABSF01000010
Euryarchaeota
Thermococcus barophilus MP [ABSF]
14915
14829
-
Ser
CGA
[ENA]
¡û
>W1610004931
AHVB01000058
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
465
551
+
Ser
CGA
[ENA]
¡û
>W1610005583
AKID01000097
Euryarchaeota
Thermococcus sp. PK [AKID]
23632
23546
-
Ser
CGA
[ENA]
¡û
>W1610548893
JXCG01000014
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
13513
13427
-
Ser
CGA
[ENA]
¡û
>W1610612464
LGET01000232
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
5
91
+
Ser
CGA
[ENA]
¡û
>W1610612823
LGFD01000018
Euryarchaeota
Thermococcus sibiricus [LGFD]
35808
35722
-
Ser
CGA
[ENA]
¡û
>W1610613054
LGFJ01000074
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
85
1
-
Ser
CGA
[ENA]
¡û
>W1610613058
LGFJ01000083
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
3429
3343
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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