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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59342 (27 seq.)
>A171000686
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
384906
384992
+
Ser
GCT
-
¡û
>A171001862
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
207834
207920
+
Ser
GCT
-
¡û
>A171002176
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1757115
1757201
+
Ser
GCT
-
¡û
>A171003273
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1267652
1267738
+
Ser
GCT
-
¡û
>A171003373
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1195712
1195626
-
Ser
GCT
-
¡û
>A171003904
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
467932
467846
-
Ser
GCT
-
¡û
>A171004033
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
316843
316929
+
Ser
GCT
-
¡û
>A171005889
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1853108
1853022
-
Ser
GCT
-
¡û
>A171006347
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
294587
294673
+
Ser
GCT
-
¡û
>A171006462
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
240985
241071
+
Ser
GCT
-
¡û
>A171007504
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1486798
1486884
+
Ser
GCT
-
¡û
>At1796
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
894809
894895
+
Ser
GCT
[Ensembl]
¡û
>At1860
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1397296
1397210
-
Ser
GCT
[Ensembl]
¡û
>At1903
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1190654
1190568
-
Ser
GCT
[Ensembl]
¡û
>WENV170675972
LDZQ01001546
[LDZQ] terrestrial metagenome; oil reservoir sample I2
7739
7825
+
Ser
GCT
[ENA]
¢þ
>WENV170676006
LDZQ01001865
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1211
1297
+
Ser
GCT
[ENA]
¢þ
>WENV170676187
LDZR01001521
[LDZR] terrestrial metagenome; oil reservoir sample K2
5711
5797
+
Ser
GCT
[ENA]
¢þ
>WENV170676314
LDZR01002238
[LDZR] terrestrial metagenome; oil reservoir sample K2
13936
14022
+
Ser
GCT
[ENA]
¢þ
>WENV170676721
LDZS01002036
[LDZS] terrestrial metagenome; oil reservoir sample K3
22830
22916
+
Ser
GCT
[ENA]
¢þ
>W1910200325
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
14760
14674
-
Ser
GCT
[ENA]
¡û
>W1610000714
ABSF01000008
Euryarchaeota
Thermococcus barophilus MP [ABSF]
24488
24402
-
Ser
GCT
[ENA]
¡û
>W1610004926
AHVB01000044
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
9149
9063
-
Ser
GCT
[ENA]
¡û
>W1610005594
AKID01000115
Euryarchaeota
Thermococcus sp. PK [AKID]
12955
13041
+
Ser
GCT
[ENA]
¡û
>W1610548879
JXCG01000004
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
107619
107533
-
Ser
GCT
[ENA]
¡û
>W1610612434
LGET01000005
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
7739
7825
+
Ser
GCT
[ENA]
¡û
>W1610612819
LGFD01000017
Euryarchaeota
Thermococcus sibiricus [LGFD]
13936
14022
+
Ser
GCT
[ENA]
¡û
>W1610613033
LGFJ01000007
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
22830
22916
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK