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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59343 (24 seq.)
>A171004358
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
3783408
3783493
+
Ser
CGA
-
¡û
>A171004639
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
2720948
2720863
-
Ser
CGA
-
¡û
>A171004681
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
3437099
3437184
+
Ser
CGA
-
¡û
>A171004734
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
3631238
3631323
+
Ser
CGA
-
¡û
>A171005339
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
2496821
2496736
-
Ser
CGA
-
¡û
>A171005427
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
3511478
3511393
-
Ser
CGA
-
¡û
>A171005483
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
3537971
3537886
-
Ser
CGA
-
¡û
>A171005523
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
4137694
4137779
+
Ser
CGA
-
¡û
>A171005579
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
3787543
3787627
+
Ser
CGA
-
¡û
>A171005628
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
3706722
3706806
+
Ser
CGA
-
¡û
>At1487
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
1927445
1927362
-
Ser
CGA
[Ensembl]
¡û
>WENV170723268
LSQX01262251
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3033
2948
-
Ser
CGA
[ENA]
¢þ
>WENV170784197
MCHG01000112
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
16191
16276
+
Ser
CGA
[ENA]
¢þ
>W1910569491
JJOW01000118
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
10102
10187
+
Ser
CGA
[ENA]
¡û
>W1910569552
JJOX01000073
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
36857
36942
+
Ser
CGA
[ENA]
¡û
>W1910569592
JJOY01000014
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
36859
36944
+
Ser
CGA
[ENA]
¡û
>W1910569640
JJOZ01000016
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
308757
308672
-
Ser
CGA
[ENA]
¡û
>W1910571590
JJQL01000056
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
7277
7192
-
Ser
CGA
[ENA]
¡û
>W1910572290
JJQY01000150
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
7360
7275
-
Ser
CGA
[ENA]
¡û
>W1910635242
LMVP01000090
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
37146
37061
-
Ser
CGA
[ENA]
¡û
>W1910655376
LZPK01000044
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
14271
14355
+
Ser
CGA
[ENA]
¡û
>W1910694779
MDTP02000057
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
16191
16276
+
Ser
CGA
[ENA]
¡û
>W1610000015
AAAR03000002
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
182633
182548
-
Ser
CGA
[ENA]
¡û
>W1610048617
BBEF01000080
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
6396
6310
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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