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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59351 (62 seq.)
>W1711115604
LUAH01000126
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
43919
44003
+
Leu
GAG
[ENA]
¡û
>W1711360550
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
2201893
2201977
+
Leu
GAG
[ENA]
¡û
>W1711506343
MKWH01000069
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
12112
12196
+
Leu
GAG
[ENA]
¡û
>W1711712732
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
44123
44207
+
Leu
GAG
[ENA]
¡û
>C171089500
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
2343036
2343120
+
Leu
GAG
-
¡û
>C171118436
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
1870980
1871064
+
Leu
GAG
-
¡û
>WENV183726547
PJTO01000006
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
44391
44475
+
Leu
GAG
[ENA]
¢þ
>WENV183727523
PJTP01000010
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
44391
44475
+
Leu
GAG
[ENA]
¢þ
>WENV183728628
PJTQ01000199
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
25178
25094
-
Leu
GAG
[ENA]
¢þ
>WENV183730643
PJTS01000242
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
19280
19196
-
Leu
GAG
[ENA]
¢þ
>WENV183732380
PJTX01000070
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
2574
2490
-
Leu
GAG
[ENA]
¢þ
>WENV183732407
PJTX01000122
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1889
1805
-
Leu
GAG
[ENA]
¢þ
>WENV183732668
PJTX01005507
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
2045
2129
+
Leu
GAG
[ENA]
¢þ
>WENV183732786
PJTX01014319
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
3
87
+
Leu
GAG
[ENA]
¢þ
>WENV183733001
PJTY01000015
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
255506
255422
-
Leu
GAG
[ENA]
¢þ
>WENV183734010
PJTZ01000018
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
255506
255422
-
Leu
GAG
[ENA]
¢þ
>WENV183734097
PJTZ01000056
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
25621
25705
+
Leu
GAG
[ENA]
¢þ
>WENV183734129
PJTZ01000073
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
25972
26056
+
Leu
GAG
[ENA]
¢þ
>WENV183734970
PJUA01000279
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
4564
4648
+
Leu
GAG
[ENA]
¢þ
>WENV183735312
PJUA01010791
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
164
80
-
Leu
GAG
[ENA]
¢þ
>WENV183735613
PJUB01000197
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
4564
4648
+
Leu
GAG
[ENA]
¢þ
>WENV183735709
PJUB01000733
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
6214
6130
-
Leu
GAG
[ENA]
¢þ
>WENV183736232
PJUC01000196
[PJUC] soil metagenome; Soil enriched on filter paper
23472
23385
-
Leu
GAG
[ENA]
¢þ
>WENV183736353
PJUC01001018
[PJUC] soil metagenome; Soil enriched on filter paper
2465
2549
+
Leu
GAG
[ENA]
¢þ
>WENV183736763
PJUD01000017
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
143636
143720
+
Leu
GAG
[ENA]
¢þ
>WENV183736986
PJUD01000175
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
27158
27242
+
Leu
GAG
[ENA]
¢þ
>WENV183737006
PJUD01000207
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
26907
26991
+
Leu
GAG
[ENA]
¢þ
>WENV183737601
PJUD01017952
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1634
1550
-
Leu
GAG
[ENA]
¢þ
>WENV183738556
PJUE01000020
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
143636
143720
+
Leu
GAG
[ENA]
¢þ
>WENV183738823
PJUE01000257
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
26907
26991
+
Leu
GAG
[ENA]
¢þ
>WENV183738940
PJUE01000546
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4545
4629
+
Leu
GAG
[ENA]
¢þ
>WENV183739907
PJUF01000061
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
116278
116191
-
Leu
GAG
[ENA]
¢þ
>WENV183740326
PJUF01001201
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
96
180
+
Leu
GAG
[ENA]
¢þ
>WENV183741068
PJUF01034670
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
242
158
-
Leu
GAG
[ENA]
¢þ
>WENV183741296
PJUF01078379
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
267
351
+
Leu
GAG
[ENA]
¢þ
>WENV183741415
PJUG01000006
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
370499
370415
-
Leu
GAG
[ENA]
¢þ
>WENV183741931
PJUH01000010
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
370499
370415
-
Leu
GAG
[ENA]
¢þ
>WENV183742563
PJUI01000016
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
370499
370415
-
Leu
GAG
[ENA]
¢þ
>WENV183743024
PJUJ01000009
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
370499
370415
-
Leu
GAG
[ENA]
¢þ
>WENV183743834
PJUK01000008
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
370499
370415
-
Leu
GAG
[ENA]
¢þ
>C181225989
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
3410604
3410519
-
Leu
GAG
-
¡û
>C191157544
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
3340731
3340647
-
Leu
GAG
-
¡û
>C191158052
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
1645089
1645002
-
Leu
GAG
-
¡û
>C191221567
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
3560340
3560255
-
Leu
GAG
-
¡û
>C191222306
LR590484
Bacteroidota
Sphingobacterium thalpophilum NCTC11429 [LR590484]
3724153
3724237
+
Leu
GAG
-
¡û
>W09123581
ACHA01000080
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
108673
108589
-
Leu
GAG
[ENA]
¡û
>W09123638
ACHB01000102
Bacteroidota
Sphingobacterium spiritivorum ATCC 33300 [ACHB]
11850
11766
-
Leu
GAG
[ENA]
¡û
>W141701952
JMLD01000005
Bacteroidota
Sphingobacterium thalpophilum DSM 11723 [JMLD]
494378
494294
-
Leu
GAG
[ENA]
¡û
>W1910664380
MCAQ01000023
Bacteroidota
Sphingobacterium siyangense T12B17 [MCAQ]
646370
646286
-
Leu
GAG
[ENA]
¡û
>W1911136210
NOUX01000002
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
437324
437239
-
Leu
GAG
[ENA]
¡û
>W1911136241
NOUY01000001
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
175530
175615
+
Leu
GAG
[ENA]
¡û
>W1810002527
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
43787
43871
+
Leu
GAG
[ENA]
¡û
>W1810069008
PEAZ01000023
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
14680
14767
+
Leu
GAG
[ENA]
¡û
>W1810346476
PVBQ01000006
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
98600
98684
+
Leu
GAG
[ENA]
¡û
>W1810346566
PVBS01000001
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
239115
239199
+
Leu
GAG
[ENA]
¡û
>W1810531908
QCXX01000002
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
44746
44830
+
Leu
GAG
[ENA]
¡û
>W1511352496
JROE01000008
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
560474
560388
-
Leu
GAG
[ENA]
¡û
>W1511590236
LBGU01000017
Bacteroidota
Sphingobacterium sp. Ag1 [LBGU]
44209
44293
+
Leu
GAG
[ENA]
¡û
>W1710521458
FNGK01000002
Bacteroidota
Sphingobacterium mizutaii [FNGK]
341370
341284
-
Leu
GAG
[ENA]
¡û
>W1710538701
FNUT01000009
Bacteroidota
Sphingobacterium lactis [FNUT]
185731
185817
+
Leu
GAG
[ENA]
¡û
>W1710576359
FOZZ01000001
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
476650
476564
-
Leu
GAG
[ENA]
¡û
>W1710608340
FXAU01000001
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
201111
201027
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK