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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59425 (131 seq.)
>W1710860539
LMCY01000037
Betaproteobacteria
Massilia sp. Root335 [LMCY]
72999
73085
+
Leu
TAG
[ENA]
¡û
>W1710863128
LMEW01000017
Betaproteobacteria
Massilia sp. Root133 [LMEW]
25936
25850
-
Leu
TAG
[ENA]
¡û
>W1710864673
LMGB01000009
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
34803
34889
+
Leu
TAG
[ENA]
¡û
>W1710867064
LMHZ01000004
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
35042
34956
-
Leu
TAG
[ENA]
¡û
>W1710871811
LMLM01000029
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
125184
125270
+
Leu
TAG
[ENA]
¡û
>W1710875410
LMOJ01000001
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
1336517
1336431
-
Leu
TAG
[ENA]
¡û
>W1711024726
LRBF01000058
Betaproteobacteria
Caballeronia megalochromosomata [LRBF]
25149
25235
+
Leu
TAG
[ENA]
¡û
>W1711082066
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
1729232
1729318
+
Leu
TAG
[ENA]
¡û
>W1711147348
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
930035
930121
+
Leu
TAG
[ENA]
¡û
>W1711149093
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
627864
627950
+
Leu
TAG
[ENA]
¡û
>W1711149167
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1055216
1055302
+
Leu
TAG
[ENA]
¡û
>W131233963
AUKK01000082
Betaproteobacteria
Glomeribacter sp. 1016415 [AUKK]
4052
3966
-
Leu
TAG
[ENA]
¡û
>W131070636
ANSK01000003
Betaproteobacteria
Paraburkholderia kururiensis M130 [ANSK]
70190
70276
+
Leu
TAG
[ENA]
¡û
>W131167201
ARDB01000055
Betaproteobacteria
Trinickia symbiotica JPY347 [ARDB]
168269
168183
-
Leu
TAG
[ENA]
¡û
>W131181080
ARNP01000137
Betaproteobacteria
Massilia niastensis DSM 21313 [ARNP]
40138
40224
+
Leu
TAG
[ENA]
¡û
>W1711421598
MHZG01000008
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
58116
58202
+
Leu
TAG
[ENA]
¡û
>W1712077076
NGUP01000005
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
65583
65497
-
Leu
TAG
[ENA]
¡û
>W1712110318
NJGV01000005
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
305
219
-
Leu
TAG
[ENA]
¡û
>C171021211
CP013136
Betaproteobacteria
Herbaspirillum seropedicae AU14040 [CP013136]
2926655
2926741
+
Leu
TAG
-
¡û
>C171035112
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1073747
1073833
+
Leu
TAG
-
¡û
>C171035151
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1092580
1092666
+
Leu
TAG
-
¡û
>C171084554
CP018811
Betaproteobacteria
Paraburkholderia sp. SOS3 [CP018811, CP018812]
2752269
2752355
+
Leu
TAG
-
¡û
>W131045991
AMSA01000002
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
295116
295030
-
Leu
TAG
[ENA]
¡û
>C011123
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
1721730
1721816
+
Leu
TAG
[Ensembl]
¡û
>WENV180017534
FSXF01000360
[FSXF] metagenome; soil
4202
4288
+
Leu
TAG
[ENA]
¢þ
>WENV180033929
FTKM01001870
[FTKM] metagenome; soil
8257
8171
-
Leu
TAG
[ENA]
¢þ
>WENV181367478
OFQB01003161
[OFQB] freshwater metagenome; Freshwater Lake
332
418
+
Leu
TAG
[ENA]
¢þ
>WENV181385355
OFRI01071950
[OFRI] wastewater metagenome; Exp Tend VB 90WW
85
171
+
Leu
TAG
[ENA]
¢þ
>W141169559
AXWA01000035
Betaproteobacteria
Oxalobacteraceae bacterium JGI 0001012-C15 [AXWA]
2432
2346
-
Leu
TAG
[ENA]
¡û
>W141170609
AXYO01000044
Betaproteobacteria
Ralstonia sp. JGI 0001001-C06 [AXYO]
27492
27578
+
Leu
TAG
[ENA]
¡û
>WENV181843861
OGVV01000259
[OGVV] freshwater metagenome; freshwater
2840
2754
-
Leu
TAG
[ENA]
¢þ
>WENV181844007
OGVV01003477
[OGVV] freshwater metagenome; freshwater
92
6
-
Leu
TAG
[ENA]
¢þ
>WENV181844312
OGVV01037778
[OGVV] freshwater metagenome; freshwater
366
452
+
Leu
TAG
[ENA]
¢þ
>WENV181853948
OGWJ01002703
[OGWJ] freshwater metagenome; freshwater
354
440
+
Leu
TAG
[ENA]
¢þ
>WENV181854875
OGWK01031787
[OGWK] freshwater metagenome; freshwater
162
248
+
Leu
TAG
[ENA]
¢þ
>W141194251
AYSW01000071
Betaproteobacteria
Robbsia andropogonis Ba3549 [AYSW]
8769
8855
+
Leu
TAG
[ENA]
¡û
>W141229437
BAMQ01000792
Betaproteobacteria
Paraburkholderia kururiensis JCM 10599 [BAMQ]
1575
1489
-
Leu
TAG
[ENA]
¡û
>W141237486
BBJI01000001
Betaproteobacteria
Paraburkholderia kururiensis subsp. thiooxydans NBRC 107107 [BBJI]
272410
272324
-
Leu
TAG
[ENA]
¡û
>W141267661
CCNS01000055
Betaproteobacteria
Caballeronia glathei [CCNS]
75467
75553
+
Leu
TAG
[ENA]
¡û
>WENV183727952
PJTP01009417
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
672
758
+
Leu
TAG
[ENA]
¢þ
>WENV183728101
PJTP01033971
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
246
332
+
Leu
TAG
[ENA]
¢þ
>WENV183735198
PJUA01002567
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
1682
1596
-
Leu
TAG
[ENA]
¢þ
>WENV170154833
CEOF01276860
[CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
87
1
-
Leu
TAG
[ENA]
¢þ
>WENV170624362
FUWD013180592
[FUWD] metagenome; unknown
1085
1171
+
Leu
TAG
[ENA]
¢þ
>WENV170632651
FUWD013385732
[FUWD] metagenome; unknown
1085
1171
+
Leu
TAG
[ENA]
¢þ
>WENV170709097
LNFM01000106
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
42814
42900
+
Leu
TAG
[ENA]
¢þ
>W141461996
JFHC01000054
Betaproteobacteria
Caballeronia glathei [JFHC]
55868
55782
-
Leu
TAG
[ENA]
¡û
>W141462050
JFHD01000035
Betaproteobacteria
Caballeronia zhejiangensis [JFHD]
13173
13259
+
Leu
TAG
[ENA]
¡û
>C181078384
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
961671
961757
+
Leu
TAG
-
¡û
>C181187726
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
1411323
1411409
+
Leu
TAG
-
¡û
>C191001071
AP018150
Betaproteobacteria
Mycoavidus cysteinexigens B1-EB [AP018150]
1707469
1707383
-
Leu
TAG
-
¡û
>C191029342
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
3197314
3197400
+
Leu
TAG
-
¡û
>W09107500
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
808823
808909
+
Leu
TAG
[ENA]
¡û
>W141739215
JNNN01000007
Betaproteobacteria
Massilia sp. LC238 [JNNN]
78424
78510
+
Leu
TAG
[ENA]
¡û
>W141811299
JPXI01000029
Betaproteobacteria
Massilia sp. BSC265 consociata [JPXI]
384344
384258
-
Leu
TAG
[ENA]
¡û
>W1911497930
OCSU01000002
Betaproteobacteria
Caballeronia arationis OK806 [OCSU]
1807316
1807402
+
Leu
TAG
[ENA]
¡û
>W1911531865
OGTP01000012
Betaproteobacteria
Caballeronia novacaledonica [OGTP]
119187
119273
+
Leu
TAG
[ENA]
¡û
>W1911802730
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
1806970
1807056
+
Leu
TAG
[ENA]
¡û
>W1810062427
PDOC01000005
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
157263
157349
+
Leu
TAG
[ENA]
¡û
>W1810196563
PNEO01000003
Betaproteobacteria
Burkholderia sp. WAC0059 [PNEO]
237921
237835
-
Leu
TAG
[ENA]
¡û
>W1810200751
PNXZ01000018
Betaproteobacteria
Trinickia caryophylli Ballard 720 [PNXZ]
39988
39902
-
Leu
TAG
[ENA]
¡û
>W1810200821
PNYA01000041
Betaproteobacteria
Trinickia dabaoshanensis GIMN1.004 [PNYA]
22106
22020
-
Leu
TAG
[ENA]
¡û
>W1810200831
PNYB01000002
Betaproteobacteria
Trinickia soli GP25-8 [PNYB]
288631
288545
-
Leu
TAG
[ENA]
¡û
>W1810200910
PNYC01000014
Betaproteobacteria
Trinickia symbiotica JPY 581 [PNYC]
123435
123521
+
Leu
TAG
[ENA]
¡û
>W1810295654
PTIR01000006
Betaproteobacteria
Trinickia symbiotica JPY-345 [PTIR]
123450
123536
+
Leu
TAG
[ENA]
¡û
>W1810297231
PTLZ01000003
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
84104
84190
+
Leu
TAG
[ENA]
¡û
>W1810330154
PUIP01000022
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
73306
73220
-
Leu
TAG
[ENA]
¡û
>W1810423912
PYUC01000009
Betaproteobacteria
Trinickia symbiotica JPY-366 [PYUC]
239708
239794
+
Leu
TAG
[ENA]
¡û
>W1810487080
QAYI01000001
Betaproteobacteria
Massilia sp. GV016 [QAYI]
1036126
1036040
-
Leu
TAG
[ENA]
¡û
>W1810577346
QEOE01000014
Betaproteobacteria
Paraburkholderia sp. OV555 [QEOE]
80843
80757
-
Leu
TAG
[ENA]
¡û
>W1810672567
QJTN01000001
Betaproteobacteria
Massilia sp. GV024 [QJTN]
1036126
1036040
-
Leu
TAG
[ENA]
¡û
>W1810692748
QLKU01000005
Betaproteobacteria
Paraburkholderia kururiensis HAMBI_2494 [QLKU]
121036
121122
+
Leu
TAG
[ENA]
¡û
>W1810692910
QLKX01000022
Betaproteobacteria
Trinickia caryophylli HAMBI_2159 [QLKX]
39838
39752
-
Leu
TAG
[ENA]
¡û
>W1810696799
QLTP01000012
Betaproteobacteria
Burkholderia sp. yr520 yr520 YR520 [QLTP]
77889
77975
+
Leu
TAG
[ENA]
¡û
>W1810699201
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
484275
484189
-
Leu
TAG
[ENA]
¡û
>W1810779288
QQOA01000012
Betaproteobacteria
Paraburkholderia phosphatilytica 7QSK02 [QQOA]
137344
137430
+
Leu
TAG
[ENA]
¡û
>W1810789182
QRGA01000005
Betaproteobacteria
Trinickia dinghuensis DHOM06 [QRGA]
150459
150373
-
Leu
TAG
[ENA]
¡û
>W1810870367
QUBS01000087
Betaproteobacteria
Trinickia diaoshuihuensis NEAU-SY24 [QUBS]
185997
185911
-
Leu
TAG
[ENA]
¡û
>W1810885086
QUNB01000005
Betaproteobacteria
Duganella sp. GV032 [QUNB]
336392
336478
+
Leu
TAG
[ENA]
¡û
>W1810886076
QUNU01000004
Betaproteobacteria
Duganella sp. GV067 [QUNU]
327367
327281
-
Leu
TAG
[ENA]
¡û
>W1810908100
QVIL01000004
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
625015
625101
+
Leu
TAG
[ENA]
¡û
>W1810908393
QVIP01000004
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
62572
62486
-
Leu
TAG
[ENA]
¡û
>W1810915073
QVQV01000002
Betaproteobacteria
Paraburkholderia sp. DHOC27 [QVQV]
266832
266918
+
Leu
TAG
[ENA]
¡û
>C151002251
AP014576
Betaproteobacteria
Burkholderia sp. RPE67 [AP014576, AP014577, AP014578]
1342665
1342579
-
Leu
TAG
-
¡û
>C151092653
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
1682036
1681950
-
Leu
TAG
-
¡û
>W1510013067
BBOF01000012
Betaproteobacteria
bacterium endosymbiont of Mortierella elongata FMR23-6 [BBOF]
37631
37717
+
Leu
TAG
[ENA]
¡û
>C10107809
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2948473
2948559
+
Leu
TAG
[Ensembl]
¡û
>W1511310212
JPQD01000049
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
7090
7004
-
Leu
TAG
[ENA]
¡û
>W1511361453
JSBM01000105
Betaproteobacteria
Caballeronia zhejiangensis CEIB S4-3 [JSBM]
11112
11026
-
Leu
TAG
[ENA]
¡û
>W1511480627
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
119882
119968
+
Leu
TAG
[ENA]
¡û
>W11143220
AEPR01000388
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
8016
8102
+
Leu
TAG
[ENA]
¡û
>W1511577565
LAQU01000012
Betaproteobacteria
Robbsia andropogonis ICMP2807 [LAQU]
39025
39111
+
Leu
TAG
[ENA]
¡û
>W1511681848
LFJH01000031
Betaproteobacteria
Candidatus Paraburkholderia schumannianae schumannianae UZHbot8 [LFJH]
13566
13652
+
Leu
TAG
[ENA]
¡û
>W1511683409
LFKV01000003
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot2 [LFKV]
12681
12595
-
Leu
TAG
[ENA]
¡û
>W1511683797
LFLS01000057
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
10820
10906
+
Leu
TAG
[ENA]
¡û
>W1511705324
LGRC01000004
Betaproteobacteria
Caballeronia cordobensis LMG 27620 [LGRC]
595894
595808
-
Leu
TAG
[ENA]
¡û
>W11187640
CAFE01000272
Betaproteobacteria
Candidatus Paraburkholderia kirkii kirkii UZHbot1 [CAFE]
3420
3334
-
Leu
TAG
[ENA]
¡û
>C121005539
CP003087
Betaproteobacteria
Burkholderia sp. YI23 [CP003087, CP003088, CP003089]
1353517
1353431
-
Leu
TAG
[Ensembl]
¡û
>C161092395
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1023450
1023364
-
Leu
TAG
[Ensembl]
¡û
>W121068697
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
1433267
1433353
+
Leu
TAG
[ENA]
¡û
>W1610071860
BCUJ01000024
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
3380
3294
-
Leu
TAG
[ENA]
¡û
>W121062116
AJHK01000003
Betaproteobacteria
Burkholderia sp. SJ98 [AJHK]
13173
13259
+
Leu
TAG
[ENA]
¡û
>W1610206060
FCNW02000017
Betaproteobacteria
Caballeronia humi [FCNW]
66298
66212
-
Leu
TAG
[ENA]
¡û
>W1610206117
FCNX02000016
Betaproteobacteria
Caballeronia fortuita LMG 29320 [FCNX]
79597
79683
+
Leu
TAG
[ENA]
¡û
>W1610206178
FCNY02000028
Betaproteobacteria
Caballeronia cordobensis [FCNY]
12136
12050
-
Leu
TAG
[ENA]
¡û
>W1610206193
FCNZ02000007
Betaproteobacteria
Caballeronia telluris [FCNZ]
46948
47034
+
Leu
TAG
[ENA]
¡û
>W1610206310
FCOB02000006
Betaproteobacteria
Caballeronia ptereochthonis LMG 29326 [FCOB]
142708
142794
+
Leu
TAG
[ENA]
¡û
>W1610206571
FCOG02000010
Betaproteobacteria
Caballeronia arationis LMG 29324 [FCOG]
62454
62540
+
Leu
TAG
[ENA]
¡û
>W1610206638
FCOH02000012
Betaproteobacteria
Caballeronia peredens LMG 29314 [FCOH]
83501
83587
+
Leu
TAG
[ENA]
¡û
>W1610206857
FCOL02000019
Betaproteobacteria
Caballeronia terrestris [FCOL]
66954
66868
-
Leu
TAG
[ENA]
¡û
>W1610206964
FCON02000038
Betaproteobacteria
Caballeronia choica [FCON]
47512
47598
+
Leu
TAG
[ENA]
¡û
>W1610722885
LMCY01000037
Betaproteobacteria
Massilia sp. Root335 [LMCY]
72999
73085
+
Leu
TAG
[ENA]
¡û
>W1610725474
LMEW01000017
Betaproteobacteria
Massilia sp. Root133 [LMEW]
25936
25850
-
Leu
TAG
[ENA]
¡û
>W1610727019
LMGB01000009
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
34803
34889
+
Leu
TAG
[ENA]
¡û
>W1610729410
LMHZ01000004
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
35042
34956
-
Leu
TAG
[ENA]
¡û
>W1610734157
LMLM01000029
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
125184
125270
+
Leu
TAG
[ENA]
¡û
>W1610737756
LMOJ01000001
Betaproteobacteria
Massilia sp. Leaf139 [LMOJ]
1336517
1336431
-
Leu
TAG
[ENA]
¡û
>W1610872838
LRBF01000058
Betaproteobacteria
Caballeronia megalochromosomata [LRBF]
25149
25235
+
Leu
TAG
[ENA]
¡û
>W1710069062
BCUJ01000024
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
3380
3294
-
Leu
TAG
[ENA]
¡û
>W1710207353
FCNW02000017
Betaproteobacteria
Caballeronia humi [FCNW]
66298
66212
-
Leu
TAG
[ENA]
¡û
>W1710207418
FCNY02000028
Betaproteobacteria
Caballeronia cordobensis [FCNY]
12136
12050
-
Leu
TAG
[ENA]
¡û
>W1710207433
FCNZ02000007
Betaproteobacteria
Caballeronia telluris [FCNZ]
46948
47034
+
Leu
TAG
[ENA]
¡û
>W1710207607
FCOL02000019
Betaproteobacteria
Caballeronia terrestris [FCOL]
66954
66868
-
Leu
TAG
[ENA]
¡û
>W1710207658
FCON02000038
Betaproteobacteria
Caballeronia choica [FCON]
47512
47598
+
Leu
TAG
[ENA]
¡û
>W1710512819
FMZS01000004
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
525635
525549
-
Leu
TAG
[ENA]
¡û
>W1710516140
FNCJ01000003
Betaproteobacteria
Paraburkholderia phenazinium [FNCJ]
581320
581234
-
Leu
TAG
[ENA]
¡û
>W1710527991
FNLO01000012
Betaproteobacteria
Chitinasiproducens palmae JS23 [FNLO]
12998
12912
-
Leu
TAG
[ENA]
¡û
>W1710534135
FNRQ01000003
Betaproteobacteria
Paraburkholderia sartisoli [FNRQ]
119582
119496
-
Leu
TAG
[ENA]
¡û
>W1710594821
FSRM01000001
Betaproteobacteria
Paraburkholderia phenazinium [FSRM]
3054891
3054805
-
Leu
TAG
[ENA]
¡û
>W1710595178
FSRU01000002
Betaproteobacteria
Paraburkholderia phenazinium [FSRU]
662531
662617
+
Leu
TAG
[ENA]
¡û
>W1710607766
FXAH01000003
Betaproteobacteria
Trinickia caryophylli [FXAH]
508688
508774
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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