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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59467 (23 seq.)
>W1710867068
LMHZ01000006
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
87121
87035
-
Leu
CAA
[ENA]
¡û
>W1711033486
LRHX01000016
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
932812
932898
+
Leu
CAA
[ENA]
¡û
>WENV180022294
FTFY01000092
[FTFY] metagenome; soil
441
527
+
Leu
CAA
[ENA]
¢þ
>WENV180030030
FTJL01075355
[FTJL] metagenome; soil
262
348
+
Leu
CAA
[ENA]
¢þ
>WENV180033720
FTKL01040757
[FTKL] metagenome; soil
830
744
-
Leu
CAA
[ENA]
¢þ
>WENV180249128
OBEQ010171068
[OBEQ] groundwater metagenome; groundwater
6196
6282
+
Leu
CAA
[ENA]
¢þ
>WENV180266001
OBEQ011710124
[OBEQ] groundwater metagenome; groundwater
340
254
-
Leu
CAA
[ENA]
¢þ
>W1910700105
MESE01000101
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
54543
54457
-
Leu
CAA
[ENA]
¡û
>W1911572386
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
3479920
3479834
-
Leu
CAA
[ENA]
¡û
>W1911802811
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
1052374
1052288
-
Leu
CAA
[ENA]
¡û
>W1810068350
PDZK01000002
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
478279
478365
+
Leu
CAA
[ENA]
¡û
>W1810121256
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
3059242
3059328
+
Leu
CAA
[ENA]
¡û
>C151062626
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
1176211
1176125
-
Leu
CAA
[Ensembl]
¡û
>C11105099
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
1028358
1028272
-
Leu
CAA
[Ensembl]
¡û
>W1511480680
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
900542
900456
-
Leu
CAA
[ENA]
¡û
>C161053620
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
1241413
1241327
-
Leu
CAA
[Ensembl]
¡û
>C161053715
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
1057176
1057090
-
Leu
CAA
[Ensembl]
¡û
>C161053813
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
995036
994950
-
Leu
CAA
[Ensembl]
¡û
>W1610729414
LMHZ01000006
Betaproteobacteria
Noviherbaspirillum sp. Root189 [LMHZ]
87121
87035
-
Leu
CAA
[ENA]
¡û
>W1710530352
FNOR01000004
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
108516
108602
+
Leu
CAA
[ENA]
¡û
>W1710556442
FOKF01000003
Betaproteobacteria
Collimonas sp. OK607 [FOKF]
186711
186625
-
Leu
CAA
[ENA]
¡û
>W1710557553
FOLC01000041
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
2938
2852
-
Leu
CAA
[ENA]
¡û
>W1710564218
FOQI01000007
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
218308
218222
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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