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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59485 (115 seq.)
>W1710806081
LKAP01000064
Gammaproteobacteria
Alcanivorax borkumensis [LKAP]
104276
104190
-
Leu
CAG
[ENA]
¡û
>W1711175806
LWEZ01001328
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
11812
11898
+
Leu
CAG
[ENA]
¡û
>W1711177244
LWFX01000965
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
380
466
+
Leu
CAG
[ENA]
¡û
>W1711333329
MBPP01000015
Gammaproteobacteria
Marinobacter sp. AC-23 [MBPP]
20220
20306
+
Leu
CAG
[ENA]
¡û
>W131034015
AJGP01000001
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [AJGP]
297660
297574
-
Leu
CAG
[ENA]
¡û
>W131099660
AOTL01000012
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
129207
129293
+
Leu
CAG
[ENA]
¡û
>W131166709
ARCR01000006
Gammaproteobacteria
Marinobacter gelidimuriae BF04_CF-4 [ARCR]
51320
51406
+
Leu
CAG
[ENA]
¡û
>C000294
AM286690
Gammaproteobacteria
Alcanivorax borkumensis SK2 [AM286690]
2504025
2504111
+
Leu
CAG
[Ensembl]
¡û
>w023522
AAXY01000002
Gammaproteobacteria
Marinobacter sp. ELB17 [AAXY]
306548
306636
+
Leu
CAG
[ENA]
¡û
>WENV180298900
OBJA01760057
[OBJA] soil metagenome; sediment, water from around vicinity
193
107
-
Leu
CAG
[ENA]
¢þ
>WENV180375390
OBOL01006676
[OBOL] marine metagenome; Surface water
265
351
+
Leu
CAG
[ENA]
¢þ
>WENV180377704
OBON01090521
[OBON] marine metagenome; sea water
317
403
+
Leu
CAG
[ENA]
¢þ
>WENV180384153
OBOW01020769
[OBOW] marine metagenome; seawater
74
160
+
Leu
CAG
[ENA]
¢þ
>WENV180390140
OBPK01031735
[OBPK] marine metagenome; Sterile flask
394
480
+
Leu
CAG
[ENA]
¢þ
>WENV181322636
OFKT01007824
[OFKT] marine metagenome; sea ice
669
583
-
Leu
CAG
[ENA]
¢þ
>WENV181323117
OFKW01009421
[OFKW] marine metagenome; sea ice
230
144
-
Leu
CAG
[ENA]
¢þ
>W08010908
ABRW01000027
Gammaproteobacteria
Alcanivorax sp. DG881 [ABRW]
29688
29774
+
Leu
CAG
[ENA]
¡û
>W141169463
AXVV01000063
Gammaproteobacteria
Gammaproteobacteria bacterium SCGC AAA003-E02 [AXVV]
4320
4406
+
Leu
CAG
[ENA]
¡û
>W141221274
AZYR01000012
Gammaproteobacteria
Alcanivorax sp. 97CO-5 [AZYR]
105731
105817
+
Leu
CAG
[ENA]
¡û
>WENV182540658
OJAO01001792
[OJAO] seawater metagenome; Sea water
69
155
+
Leu
CAG
[ENA]
¢þ
>WENV182540771
OJAP01007998
[OJAP] seawater metagenome; Sea water
680
594
-
Leu
CAG
[ENA]
¢þ
>WENV182541939
OJAV01000038
[OJAV] seawater metagenome; Sea water
37740
37826
+
Leu
CAG
[ENA]
¢þ
>WENV182542319
OJAY01000055
[OJAY] seawater metagenome; Sea water
57053
56967
-
Leu
CAG
[ENA]
¢þ
>WENV182542911
OJAZ01007093
[OJAZ] seawater metagenome; Sea water
1777
1691
-
Leu
CAG
[ENA]
¢þ
>WENV182543900
OJBD01000759
[OJBD] seawater metagenome; Sea water
4373
4459
+
Leu
CAG
[ENA]
¢þ
>WENV182544842
OJBK01000255
[OJBK] seawater metagenome; Sea water
2112
2026
-
Leu
CAG
[ENA]
¢þ
>WENV182545902
OJBO01000055
[OJBO] seawater metagenome; Sea water
61049
60963
-
Leu
CAG
[ENA]
¢þ
>WENV182545911
OJBO01000081
[OJBO] seawater metagenome; Sea water
3720
3806
+
Leu
CAG
[ENA]
¢þ
>WENV182547098
OJBR01000954
[OJBR] seawater metagenome; Sea water
3730
3816
+
Leu
CAG
[ENA]
¢þ
>WENV182547125
OJBR01001665
[OJBR] seawater metagenome; Sea water
2664
2750
+
Leu
CAG
[ENA]
¢þ
>WENV182547611
OJBT01000042
[OJBT] seawater metagenome; Sea water
14843
14929
+
Leu
CAG
[ENA]
¢þ
>WENV182547912
OJBU01001869
[OJBU] seawater metagenome; Sea water
3275
3361
+
Leu
CAG
[ENA]
¢þ
>WENV182548714
OJBX01000025
[OJBX] seawater metagenome; Sea water
60625
60539
-
Leu
CAG
[ENA]
¢þ
>WENV182549292
OJBY01000145
[OJBY] seawater metagenome; Sea water
4908
4994
+
Leu
CAG
[ENA]
¢þ
>WENV182549314
OJBY01000213
[OJBY] seawater metagenome; Sea water
25199
25285
+
Leu
CAG
[ENA]
¢þ
>WENV182549894
OJBZ01000276
[OJBZ] seawater metagenome; Sea water
1262
1348
+
Leu
CAG
[ENA]
¢þ
>WENV182552739
OJCO01002466
[OJCO] seawater metagenome; Sea water
749
663
-
Leu
CAG
[ENA]
¢þ
>WENV182553274
OJCR01001099
[OJCR] seawater metagenome; Sea water
5068
5154
+
Leu
CAG
[ENA]
¢þ
>WENV182554018
OJCS01006104
[OJCS] seawater metagenome; Sea water
68
154
+
Leu
CAG
[ENA]
¢þ
>WENV182554948
OJCY01000084
[OJCY] seawater metagenome; Sea water
2664
2750
+
Leu
CAG
[ENA]
¢þ
>WENV182555301
OJCZ01002912
[OJCZ] seawater metagenome; Sea water
55
141
+
Leu
CAG
[ENA]
¢þ
>WENV182555311
OJDA01000007
[OJDA] seawater metagenome; Sea water
104585
104499
-
Leu
CAG
[ENA]
¢þ
>WENV182555708
OJDD01000054
[OJDD] seawater metagenome; Sea water
41475
41561
+
Leu
CAG
[ENA]
¢þ
>WENV182556037
OJDF01005801
[OJDF] seawater metagenome; Sea water
61
147
+
Leu
CAG
[ENA]
¢þ
>WENV182556955
OJDI01000073
[OJDI] seawater metagenome; Sea water
40573
40487
-
Leu
CAG
[ENA]
¢þ
>WENV182557645
OJDK01001064
[OJDK] seawater metagenome; Sea water
7620
7534
-
Leu
CAG
[ENA]
¢þ
>WENV182559840
OJDQ01008377
[OJDQ] seawater metagenome; Sea water
913
827
-
Leu
CAG
[ENA]
¢þ
>WENV182561407
OJDW01000023
[OJDW] seawater metagenome; Sea water
95622
95708
+
Leu
CAG
[ENA]
¢þ
>WENV182562380
OJDZ01001675
[OJDZ] seawater metagenome; Sea water
1545
1631
+
Leu
CAG
[ENA]
¢þ
>WENV182565125
OJEG01003382
[OJEG] seawater metagenome; Sea water
1008
922
-
Leu
CAG
[ENA]
¢þ
>WENV182565363
OJEH01003184
[OJEH] seawater metagenome; Sea water
2366
2452
+
Leu
CAG
[ENA]
¢þ
>WENV182566758
OJEM01002300
[OJEM] seawater metagenome; Sea water
373
459
+
Leu
CAG
[ENA]
¢þ
>WENV182567242
OJEN01026865
[OJEN] seawater metagenome; Sea water
200
114
-
Leu
CAG
[ENA]
¢þ
>WENV182567264
OJEO01000005
[OJEO] seawater metagenome; Sea water
269353
269439
+
Leu
CAG
[ENA]
¢þ
>WENV182568145
OJEQ01002592
[OJEQ] seawater metagenome; Sea water
68
154
+
Leu
CAG
[ENA]
¢þ
>WENV182568513
OJEV01000167
[OJEV] seawater metagenome; Sea water
2014
1928
-
Leu
CAG
[ENA]
¢þ
>WENV182568821
OJEX01000022
[OJEX] seawater metagenome; Sea water
95622
95708
+
Leu
CAG
[ENA]
¢þ
>WENV182571014
OJFG01000044
[OJFG] seawater metagenome; Sea water
52833
52747
-
Leu
CAG
[ENA]
¢þ
>WENV182571386
OJFH01000442
[OJFH] seawater metagenome; Sea water
54
140
+
Leu
CAG
[ENA]
¢þ
>WENV182572013
OJFL01000067
[OJFL] seawater metagenome; Sea water
9547
9633
+
Leu
CAG
[ENA]
¢þ
>WENV182576184
OJFX01004774
[OJFX] seawater metagenome; Sea water
3394
3480
+
Leu
CAG
[ENA]
¢þ
>WENV182577226
OJGD01000044
[OJGD] seawater metagenome; Sea water
40598
40512
-
Leu
CAG
[ENA]
¢þ
>WENV182577462
OJGF01001137
[OJGF] seawater metagenome; Sea water
100
186
+
Leu
CAG
[ENA]
¢þ
>WENV182577888
OJGL01003060
[OJGL] seawater metagenome; Sea water
69
155
+
Leu
CAG
[ENA]
¢þ
>WENV182578459
OJGO01000059
[OJGO] seawater metagenome; Sea water
33427
33513
+
Leu
CAG
[ENA]
¢þ
>WENV182579838
OJGU01000060
[OJGU] seawater metagenome; Sea water
61049
60963
-
Leu
CAG
[ENA]
¢þ
>WENV182580741
OJGW01010271
[OJGW] seawater metagenome; Sea water
1653
1567
-
Leu
CAG
[ENA]
¢þ
>WENV182581670
OJGX01034512
[OJGX] seawater metagenome; Sea water
610
524
-
Leu
CAG
[ENA]
¢þ
>WENV182581747
OJGY01002213
[OJGY] seawater metagenome; Sea water
704
618
-
Leu
CAG
[ENA]
¢þ
>WENV182581950
OJGZ01000754
[OJGZ] seawater metagenome; Sea water
3720
3806
+
Leu
CAG
[ENA]
¢þ
>WENV182582768
OJHC01000028
[OJHC] seawater metagenome; Sea water
41474
41560
+
Leu
CAG
[ENA]
¢þ
>WENV182583690
OJHE01000326
[OJHE] seawater metagenome; Sea water
166
80
-
Leu
CAG
[ENA]
¢þ
>WENV182585897
OJHJ01000028
[OJHJ] seawater metagenome; Sea water
95009
94923
-
Leu
CAG
[ENA]
¢þ
>WENV182586292
OJHK01000038
[OJHK] seawater metagenome; Sea water
76306
76392
+
Leu
CAG
[ENA]
¢þ
>WENV182587464
OJHM01008723
[OJHM] seawater metagenome; Sea water
792
878
+
Leu
CAG
[ENA]
¢þ
>WENV182588197
OJHO01022165
[OJHO] seawater metagenome; Sea water
339
425
+
Leu
CAG
[ENA]
¢þ
>WENV182588617
OJHV01002859
[OJHV] seawater metagenome; Sea water
68
154
+
Leu
CAG
[ENA]
¢þ
>WENV182588731
OJHW01010900
[OJHW] seawater metagenome; Sea water
480
394
-
Leu
CAG
[ENA]
¢þ
>WENV182590868
OJIK01001954
[OJIK] seawater metagenome; Sea water
2588
2502
-
Leu
CAG
[ENA]
¢þ
>WENV182592916
OJIS01001086
[OJIS] seawater metagenome; Sea water
2739
2653
-
Leu
CAG
[ENA]
¢þ
>WENV183054246
OLGS01006206
[OLGS] seawater metagenome; Sea water
53
139
+
Leu
CAG
[ENA]
¢þ
>WENV183055207
OLGX01000157
[OLGX] seawater metagenome; Sea water
4828
4742
-
Leu
CAG
[ENA]
¢þ
>WENV183057150
OLHK01005750
[OLHK] seawater metagenome; Sea water
200
114
-
Leu
CAG
[ENA]
¢þ
>WENV183057397
OLHL01001368
[OLHL] seawater metagenome; Sea water
4479
4393
-
Leu
CAG
[ENA]
¢þ
>WENV183062102
OLID01000047
[OLID] seawater metagenome; Sea water
48294
48380
+
Leu
CAG
[ENA]
¢þ
>WENV183614767
OOEA01000295
[OOEA] marine metagenome; sea ice
2085
2171
+
Leu
CAG
[ENA]
¢þ
>WENV183615635
OOEB01068738
[OOEB] marine metagenome; sea ice
234
148
-
Leu
CAG
[ENA]
¢þ
>WENV183616004
OOEC01019800
[OOEC] marine metagenome; sea ice
126
212
+
Leu
CAG
[ENA]
¢þ
>WENV183617534
OOEG01005414
[OOEG] marine metagenome; sea ice
1002
1088
+
Leu
CAG
[ENA]
¢þ
>WENV170015416
AZIG01006305
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
106499
106585
+
Leu
CAG
[ENA]
¢þ
>WENV170015770
AZII01008292
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
5749
5663
-
Leu
CAG
[ENA]
¢þ
>WENV170016474
AZIK01008045
[AZIK] marine sediment metagenome; enrichment culture of sample MGS-ANC(AMM) from oil contaminated site at the Ancona Port
9727
9813
+
Leu
CAG
[ENA]
¢þ
>WENV170365539
CETN01096759
[CETN] marine metagenome genome assembly TARA_122_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
193
279
+
Leu
CAG
[ENA]
¢þ
>WENV170673032
LAZR01004761
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
2876
2962
+
Leu
CAG
[ENA]
¢þ
>WENV170763138
LWDU01002700
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
761
675
-
Leu
CAG
[ENA]
¢þ
>WENV170820882
MDSY01013299
[MDSY] marine metagenome; seawater
3090
3004
-
Leu
CAG
[ENA]
¢þ
>WENV170825792
MDSY01100003
[MDSY] marine metagenome; seawater
1064
978
-
Leu
CAG
[ENA]
¢þ
>C191027202
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
2763484
2763398
-
Leu
CAG
-
¡û
>C191143451
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
1382202
1382116
-
Leu
CAG
-
¡û
>W1911424830
NXGV01000003
Gammaproteobacteria
Marinobacter sp. ANT_B65 [NXGV]
541749
541835
+
Leu
CAG
[ENA]
¡û
>W1810057888
PDJA01000001
Gammaproteobacteria
Marinobacter sp. LV10MA510-1 [PDJA]
4196294
4196208
-
Leu
CAG
[ENA]
¡û
>W1810058557
PDJM01000001
Gammaproteobacteria
Marinobacter sp. LV10R520-4 [PDJM]
2569218
2569132
-
Leu
CAG
[ENA]
¡û
>W1810153767
PIXQ01000012
Gammaproteobacteria
Alcanivorax sp. 97CO-6 [PIXQ]
105637
105723
+
Leu
CAG
[ENA]
¡û
>W1810173492
PJNC01000001
Gammaproteobacteria
Marinobacter sp. LV10R510-8 [PJNC]
158747
158833
+
Leu
CAG
[ENA]
¡û
>W1810604645
QGMP01000001
Gammaproteobacteria
Isoalcanivorax indicus SW127 [QGMP]
414971
414885
-
Leu
CAG
[ENA]
¡û
>C151002476
AP014613
Gammaproteobacteria
Alcanivorax sp. NBRC 101098 [AP014613]
2481639
2481725
+
Leu
CAG
[Ensembl]
¡û
>C151006541
CP004387
Gammaproteobacteria
Isoalcanivorax pacificus W11-5 [CP004387]
3528451
3528537
+
Leu
CAG
[Ensembl]
¡û
>C151083258
CP011494
Gammaproteobacteria
Marinobacter psychrophilus 20041 [CP011494]
953925
953839
-
Leu
CAG
[Ensembl]
¡û
>C151098022
FO082060
Gammaproteobacteria
Methylotuvimicrobium alcaliphilum 20Z [FO082060]
1585988
1585902
-
Leu
CAG
[Ensembl]
¡û
>W1610078249
BDAT01000004
Gammaproteobacteria
Alcanivorax sp. NBRC 102028 [BDAT]
110303
110389
+
Leu
CAG
[ENA]
¡û
>C131005707
CP003735
Gammaproteobacteria
Marinobacter sp. BSs20148 [CP003735]
868787
868701
-
Leu
CAG
[Ensembl]
¡û
>W1610984119
LWEZ01001328
Gammaproteobacteria
Alcanivorax sp. HI0044 [LWEZ]
11812
11898
+
Leu
CAG
[ENA]
¡û
>W1610985557
LWFX01000965
Gammaproteobacteria
Alcanivorax sp. HI0083 [LWFX]
380
466
+
Leu
CAG
[ENA]
¡û
>W1710076808
BDAT01000004
Gammaproteobacteria
Alcanivorax sp. NBRC 102028 [BDAT]
110303
110389
+
Leu
CAG
[ENA]
¡û
>W1710590017
FRAQ01000003
Gammaproteobacteria
Marinobacter antarcticus [FRAQ]
78355
78269
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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