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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59502 (56 seq.)
>W1710890897
LNCE01000016
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
222278
222192
-
Leu
TAA
[ENA]
¡û
>W1710924031
LOCQ01000058
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
281521
281605
+
Leu
TAA
[ENA]
¡û
>W1711033414
LRHW01000069
Betaproteobacteria
Janthinobacterium lividum [LRHW]
51228
51142
-
Leu
TAA
[ENA]
¡û
>W1711033491
LRHX01000019
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
33495
33411
-
Leu
TAA
[ENA]
¡û
>W1711033509
LRHY01000028
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
49573
49659
+
Leu
TAA
[ENA]
¡û
>W1711033595
LRHZ01000017
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
72554
72468
-
Leu
TAA
[ENA]
¡û
>W1711033655
LRIA01000089
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
49578
49664
+
Leu
TAA
[ENA]
¡û
>W1711033731
LRIB01000049
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
6174
6088
-
Leu
TAA
[ENA]
¡û
>W1711033779
LRIC01000052
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
50154
50240
+
Leu
TAA
[ENA]
¡û
>W1711033844
LRID01000110
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
161875
161789
-
Leu
TAA
[ENA]
¡û
>W1711308613
MAQB02000006
Betaproteobacteria
Janthinobacterium lividum [MAQB]
47734
47820
+
Leu
TAA
[ENA]
¡û
>W1712004428
NEGX01000002
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
274489
274403
-
Leu
TAA
[ENA]
¡û
>W1712004548
NEGY01000025
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
47948
47862
-
Leu
TAA
[ENA]
¡û
>W1712004588
NEGZ01000006
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
94292
94378
+
Leu
TAA
[ENA]
¡û
>W1712004681
NEHA01000020
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
48223
48137
-
Leu
TAA
[ENA]
¡û
>W1712004753
NEHB01000005
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
154878
154792
-
Leu
TAA
[ENA]
¡û
>C171010479
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
2074571
2074657
+
Leu
TAA
-
¡û
>C171094990
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
4188633
4188719
+
Leu
TAA
-
¡û
>WENV180018481
FSZM01000021
[FSZM] metagenome; soil
3200
3114
-
Leu
TAA
[ENA]
¢þ
>WENV180035078
FTKT01000907
[FTKT] metagenome; soil
848
934
+
Leu
TAA
[ENA]
¢þ
>W141484476
JFYR01000023
Betaproteobacteria
Janthinobacterium lividum [JFYR]
347
261
-
Leu
TAA
[ENA]
¡û
>C181081127
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4263237
4263323
+
Leu
TAA
-
¡û
>C191098123
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
3567141
3567227
+
Leu
TAA
-
¡û
>C191188128
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
1952362
1952448
+
Leu
TAA
-
¡û
>W141821500
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
1755854
1755940
+
Leu
TAA
[ENA]
¡û
>W1910942577
NJGY01000003
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
683726
683640
-
Leu
TAA
[ENA]
¡û
>W1911199841
NRDQ01000016
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
32013
31927
-
Leu
TAA
[ENA]
¡û
>W1810068212
PDZI01000018
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
12418
12332
-
Leu
TAA
[ENA]
¡û
>W1810068235
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
2234483
2234569
+
Leu
TAA
[ENA]
¡û
>W1810068336
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
2304202
2304116
-
Leu
TAA
[ENA]
¡û
>W1810068417
PDZL01000008
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
222365
222279
-
Leu
TAA
[ENA]
¡û
>W1810068516
PDZM01000009
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
1725
1639
-
Leu
TAA
[ENA]
¡û
>W1810068596
PDZN01000026
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
45563
45477
-
Leu
TAA
[ENA]
¡û
>W1810068631
PDZO02000001
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
238921
238835
-
Leu
TAA
[ENA]
¡û
>W1810068759
PDZP01000016
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
47275
47189
-
Leu
TAA
[ENA]
¡û
>W1810069785
PEBS01000067
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
187
273
+
Leu
TAA
[ENA]
¡û
>W1810071304
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
5433341
5433255
-
Leu
TAA
[ENA]
¡û
>W1810072801
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
4988815
4988731
-
Leu
TAA
[ENA]
¡û
>W1810089375
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
1717074
1717160
+
Leu
TAA
[ENA]
¡û
>W1810121252
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1421508
1421594
+
Leu
TAA
[ENA]
¡û
>W1810172796
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
2213217
2213301
+
Leu
TAA
[ENA]
¡û
>W1810576789
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
4159513
4159599
+
Leu
TAA
[ENA]
¡û
>W1511355676
JRRH01000005
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
46746
46832
+
Leu
TAA
[ENA]
¡û
>W1511588772
LBCO01000024
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
527262
527176
-
Leu
TAA
[ENA]
¡û
>W121031829
AHHB01000036
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
219147
219233
+
Leu
TAA
[ENA]
¡û
>W1610751293
LNCE01000016
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
222278
222192
-
Leu
TAA
[ENA]
¡û
>W1610781677
LOCQ01000058
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
281521
281605
+
Leu
TAA
[ENA]
¡û
>W1611056227
MAQB01000005
Betaproteobacteria
Janthinobacterium lividum [MAQB]
87867
87953
+
Leu
TAA
[ENA]
¡û
>W1710509370
FMXD01000006
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
12852
12766
-
Leu
TAA
[ENA]
¡û
>W1710517028
FNDA01000001
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
1071817
1071731
-
Leu
TAA
[ENA]
¡û
>W1710522178
FNHA01000001
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
784293
784379
+
Leu
TAA
[ENA]
¡û
>W1710556771
FOKL01000008
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
308074
308160
+
Leu
TAA
[ENA]
¡û
>W1710568826
FOTW01000026
Betaproteobacteria
Rugamonas rubra [FOTW]
25077
25163
+
Leu
TAA
[ENA]
¡û
>W1710581697
FPKH01000001
Betaproteobacteria
Janthinobacterium lividum [FPKH]
818702
818616
-
Leu
TAA
[ENA]
¡û
>W1710596903
FTMV01000028
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
12616
12700
+
Leu
TAA
[ENA]
¡û
>W1710720634
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
773904
773818
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK