This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59595 (40 seq.)
>W1711318788
MAYS01000258
Gammaproteobacteria
Candidatus Erwinia dacicola [MAYS]
5740
5826
+
Leu
GAG
[ENA]
¡û
>W1711319085
MAZB01000015
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
5971
6057
+
Leu
GAG
[ENA]
¡û
>W1711379562
MEAE01000015
Gammaproteobacteria
Yersinia ruckeri [MEAE]
69229
69143
-
Leu
GAG
[ENA]
¡û
>W1711383032
MECD01000109
Gammaproteobacteria
Yersinia ruckeri [MECD]
69251
69165
-
Leu
GAG
[ENA]
¡û
>W1711634898
MPUI01000001
Gammaproteobacteria
Pectobacterium actinidiae subsp. actinidiae [MPUI]
449578
449664
+
Leu
GAG
[ENA]
¡û
>W131243264
CAOY01000005
Gammaproteobacteria
Erwinia amylovora Ea266 [CAOY]
84454
84540
+
Leu
GAG
[ENA]
¡û
>W131243321
CAOZ01000006
Gammaproteobacteria
Erwinia amylovora CFBP 2585 [CAOZ]
40426
40512
+
Leu
GAG
[ENA]
¡û
>C008228
BX950851
Gammaproteobacteria
Pectobacterium atrosepticum [BX950851]
773027
773113
+
Leu
GAG
[Ensembl]
¡û
>WENV181228880
OFEI01000051
[OFEI] insect metagenome; insect
5853
5939
+
Leu
GAG
[ENA]
¢þ
>WENV181232011
OFEL01000055
[OFEL] insect metagenome; insect
5848
5934
+
Leu
GAG
[ENA]
¢þ
>W141256325
CBVU010000005
Gammaproteobacteria
Erwinia amylovora LA637 [CBVU]
83995
84081
+
Leu
GAG
[ENA]
¡û
>C08004856
CU468135
Gammaproteobacteria
Erwinia tasmaniensis Et1/99 [CU468135]
401607
401693
+
Leu
GAG
[Ensembl]
¡û
>WENV170668523
LAFT01007584
[LAFT] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.3g/mL
240
326
+
Leu
GAG
[ENA]
¢þ
>WENV170700084
LIDZ01001300
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
9372
9286
-
Leu
GAG
[ENA]
¢þ
>WENV170700087
LIDZ01001432
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
203
117
-
Leu
GAG
[ENA]
¢þ
>W141462181
JFHN01000045
Gammaproteobacteria
Erwinia mallotivora [JFHN]
73969
74055
+
Leu
GAG
[ENA]
¡û
>C191021115
CP022725
Gammaproteobacteria
Erwinia persicina B64 [CP022725]
4483213
4483299
+
Leu
GAG
-
¡û
>C191126251
CP034474
Gammaproteobacteria
Pantoea agglomerans CFSAN047154 [CP034474]
255979
256065
+
Leu
GAG
-
¡û
>W09110765
ABVX01000008
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliensis PBR1692 [ABVX]
1755
1841
+
Leu
GAG
[ENA]
¡û
>W141712614
JMRT01000024
Gammaproteobacteria
Pantoea sp. 3.5.1 [JMRT]
32122
32036
-
Leu
GAG
[ENA]
¡û
>W141821418
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
148072
148158
+
Leu
GAG
[ENA]
¡û
>W1910617938
LJAM02000012
Gammaproteobacteria
Candidatus Erwinia dacicola dacicola Oroville [LJAM]
12656
12570
-
Leu
GAG
[ENA]
¡û
>W1911174465
NQJN01000001
Gammaproteobacteria
Erwinia amylovora MAGFLF 2 [NQJN]
3475618
3475532
-
Leu
GAG
[ENA]
¡û
>W1911174615
NQJP01000001
Gammaproteobacteria
Erwinia amylovora CTBT1-1 [NQJP]
3475443
3475357
-
Leu
GAG
[ENA]
¡û
>W1911174739
NQJR01000027
Gammaproteobacteria
Erwinia amylovora VTBL01-1 [NQJR]
84857
84943
+
Leu
GAG
[ENA]
¡û
>W1911175346
NQJZ01000067
Gammaproteobacteria
Erwinia amylovora EA110 [NQJZ]
84592
84678
+
Leu
GAG
[ENA]
¡û
>W1911811883
QZDH01000069
Gammaproteobacteria
Pectobacterium carotovorum S1.15.11.2D [QZDH]
74416
74502
+
Leu
GAG
[ENA]
¡û
>W1911812035
QZDL01000027
Gammaproteobacteria
Pectobacterium versatile S4.16.03.3K [QZDL]
49081
48995
-
Leu
GAG
[ENA]
¡û
>W1810065157
PDVY01000002
Gammaproteobacteria
Pectobacterium versatile PB69 [PDVY]
585348
585262
-
Leu
GAG
[ENA]
¡û
>W1810625555
QHJV01000014
Gammaproteobacteria
Pectobacterium aquaticum A101-S19-F16 [QHJV]
93101
93015
-
Leu
GAG
[ENA]
¡û
>C10106518
FP236842
Gammaproteobacteria
Erwinia pyrifoliae Ep1/96 [FP236842]
426115
426201
+
Leu
GAG
[Ensembl]
¡û
>C10106593
FN392235
Gammaproteobacteria
Erwinia pyrifoliae DSM 12163 [FN392235]
426131
426217
+
Leu
GAG
[Ensembl]
¡û
>W1511205176
JMSO01000019
Gammaproteobacteria
bacteria symbiont BFo1 of Frankliniella occidentalis [JMSO]
10280
10366
+
Leu
GAG
[ENA]
¡û
>W1511436035
JUJM01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense YC T3 [JUJM]
388040
388126
+
Leu
GAG
[ENA]
¡û
>W1511507565
JXNU01000003
Gammaproteobacteria
Erwinia tracheiphila BuffGH [JXNU]
3832616
3832702
+
Leu
GAG
[ENA]
¡û
>W1511705417
LGRF01000002
Gammaproteobacteria
Pectobacterium brasiliense subsp. brasiliense BD255 [LGRF]
375017
375103
+
Leu
GAG
[ENA]
¡û
>C121012648
CP003415
Gammaproteobacteria
Pectobacterium parmentieri SCC3193 [CP003415]
773721
773807
+
Leu
GAG
-
¡û
>W1610631668
LIME01000016
Gammaproteobacteria
Pantoea agglomerans [LIME]
206577
206663
+
Leu
GAG
[ENA]
¡û
>W1611062358
MAZB01000015
Gammaproteobacteria
Candidatus Erwinia dacicola [MAZB]
5971
6057
+
Leu
GAG
[ENA]
¡û
>W1710764483
LIME01000016
Gammaproteobacteria
Pantoea agglomerans [LIME]
206577
206663
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK