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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59655 (127 seq.)
>W1711260678
LYWI01000021
Bacillota
Limosilactobacillus reuteri [LYWI]
117545
117632
+
Leu
CAG
[ENA]
¡û
>W1711299285
MAGB01000123
Bacillota
Limosilactobacillus reuteri [MAGB]
9492
9405
-
Leu
CAG
[ENA]
¡û
>W1711329055
MBLQ01000083
Bacillota
Limosilactobacillus reuteri [MBLQ]
35550
35463
-
Leu
CAG
[ENA]
¡û
>W1711329130
MBLR01000131
Bacillota
Limosilactobacillus reuteri [MBLR]
9582
9669
+
Leu
CAG
[ENA]
¡û
>W1711329188
MBLS01000105
Bacillota
Limosilactobacillus reuteri [MBLS]
9586
9673
+
Leu
CAG
[ENA]
¡û
>W1711329249
MBLT01000113
Bacillota
Limosilactobacillus reuteri [MBLT]
35552
35465
-
Leu
CAG
[ENA]
¡û
>W1711329284
MBLU01000013
Bacillota
Limosilactobacillus reuteri [MBLU]
23673
23760
+
Leu
CAG
[ENA]
¡û
>W1711345277
MCNS01000011
Bacillota
Limosilactobacillus reuteri [MCNS]
20160
20073
-
Leu
CAG
[ENA]
¡û
>W1711433448
MIME01000079
Bacillota
Limosilactobacillus reuteri [MIME]
9410
9497
+
Leu
CAG
[ENA]
¡û
>W1711433473
MIMF01000003
Bacillota
Limosilactobacillus reuteri [MIMF]
485
572
+
Leu
CAG
[ENA]
¡û
>W1711433571
MIMH01000077
Bacillota
Limosilactobacillus reuteri [MIMH]
18345
18432
+
Leu
CAG
[ENA]
¡û
>W1711433617
MIMI01000072
Bacillota
Limosilactobacillus reuteri [MIMI]
64402
64315
-
Leu
CAG
[ENA]
¡û
>W1711433700
MIMJ01000092
Bacillota
Limosilactobacillus reuteri [MIMJ]
63014
62927
-
Leu
CAG
[ENA]
¡û
>W1711433755
MIMK01000061
Bacillota
Limosilactobacillus reuteri [MIMK]
104338
104253
-
Leu
CAG
[ENA]
¡û
>W1711433814
MIML01000063
Bacillota
Limosilactobacillus reuteri [MIML]
63061
62974
-
Leu
CAG
[ENA]
¡û
>W1711433854
MIMN01000033
Bacillota
Limosilactobacillus reuteri [MIMN]
20948
20861
-
Leu
CAG
[ENA]
¡û
>W1711433931
MIMO01000048
Bacillota
Limosilactobacillus reuteri [MIMO]
6483
6570
+
Leu
CAG
[ENA]
¡û
>W1711433998
MIMP01000055
Bacillota
Limosilactobacillus reuteri [MIMP]
63293
63206
-
Leu
CAG
[ENA]
¡û
>W1711434026
MIMR01000110
Bacillota
Limosilactobacillus reuteri [MIMR]
25234
25321
+
Leu
CAG
[ENA]
¡û
>W1711434130
MIMS01000087
Bacillota
Limosilactobacillus reuteri [MIMS]
64363
64276
-
Leu
CAG
[ENA]
¡û
>W1711434191
MIMT01000116
Bacillota
Limosilactobacillus reuteri [MIMT]
6484
6571
+
Leu
CAG
[ENA]
¡û
>W1711434255
MIMU01000106
Bacillota
Limosilactobacillus reuteri [MIMU]
64387
64300
-
Leu
CAG
[ENA]
¡û
>W1711434328
MIMV01000253
Bacillota
Limosilactobacillus reuteri [MIMV]
481
568
+
Leu
CAG
[ENA]
¡û
>W1711434385
MIMW01000114
Bacillota
Limosilactobacillus reuteri [MIMW]
21524
21437
-
Leu
CAG
[ENA]
¡û
>W1711499306
MKQH01000012
Bacillota
Limosilactobacillus reuteri [MKQH]
45566
45653
+
Leu
CAG
[ENA]
¡û
>W1711790927
MWIJ01000047
Bacillota
Limosilactobacillus reuteri [MWIJ]
345
258
-
Leu
CAG
[ENA]
¡û
>W1711799154
MWVS01000072
Bacillota
Limosilactobacillus reuteri [MWVS]
33825
33738
-
Leu
CAG
[ENA]
¡û
>C171128148
LN906634
Bacillota
Limosilactobacillus reuteri subsp. suis ATCC 53608 [LN906634]
729021
729108
+
Leu
CAG
-
¡û
>C012588
CP000705
Bacillota
Limosilactobacillus reuteri subsp. reuteri DSM 20016 [CP000705]
1329587
1329501
-
Leu
CAG
[Ensembl]
¡û
>w016220
AAPZ01000013
Bacillota
Limosilactobacillus reuteri 100-23 [AAPZ]
21208
21296
+
Leu
CAG
[ENA]
¡û
>w015070
AAOV01000074
Bacillota
Limosilactobacillus reuteri JCM 1112 [AAOV]
5845
5757
-
Leu
CAG
[ENA]
¡û
>WENV180339928
OBLI01010047
[OBLI] pig gut metagenome; faeces
366
280
-
Leu
CAG
[ENA]
¢þ
>WENV180440786
OBWV01001949
[OBWV] human gut metagenome; faeces
2863
2777
-
Leu
CAG
[ENA]
¢þ
>WENV180467939
OBYJ01000120
[OBYJ] human gut metagenome; faeces
31437
31351
-
Leu
CAG
[ENA]
¢þ
>WENV181241542
OFFF01001877
[OFFF] mouse gut metagenome; faeces
273
187
-
Leu
CAG
[ENA]
¢þ
>WENV181255241
OFFS01000838
[OFFS] mouse gut metagenome; faeces
191
105
-
Leu
CAG
[ENA]
¢þ
>WENV181258616
OFFV01001161
[OFFV] mouse gut metagenome; faeces
273
187
-
Leu
CAG
[ENA]
¢þ
>WENV181262193
OFFY01001849
[OFFY] mouse gut metagenome; faeces
191
105
-
Leu
CAG
[ENA]
¢þ
>WENV181272008
OFGG01001352
[OFGG] mouse gut metagenome; faeces
16180
16266
+
Leu
CAG
[ENA]
¢þ
>WENV181273375
OFGH01001344
[OFGH] mouse gut metagenome; faeces
273
187
-
Leu
CAG
[ENA]
¢þ
>WENV181282000
OFGP01001536
[OFGP] mouse gut metagenome; faeces
191
105
-
Leu
CAG
[ENA]
¢þ
>WENV181284798
OFGR01007574
[OFGR] mouse gut metagenome; faeces
1830
1916
+
Leu
CAG
[ENA]
¢þ
>WENV181300450
OFHN01001467
[OFHN] mouse gut metagenome; faeces
273
187
-
Leu
CAG
[ENA]
¢þ
>WENV181301862
OFHO01001531
[OFHO] mouse gut metagenome; faeces
16180
16266
+
Leu
CAG
[ENA]
¢þ
>WENV181553718
OGIR01000396
[OGIR] metagenome; Human gut stool
17392
17306
-
Leu
CAG
[ENA]
¢þ
>WENV182097307
OHHO01019823
[OHHO] human gut metagenome; feces
295
381
+
Leu
CAG
[ENA]
¢þ
>WENV182891642
OKSH01002503
[OKSH] human gut metagenome; faeces
3610
3696
+
Leu
CAG
[ENA]
¢þ
>C08006200
AP007281
Bacillota
Limosilactobacillus reuteri subsp. reuteri JCM 1112 [AP007281]
1369205
1369118
-
Leu
CAG
[Ensembl]
¡û
>WENV183139558
OLOI01000951
[OLOI] human gut metagenome; faeces
5979
5893
-
Leu
CAG
[ENA]
¢þ
>WENV183493851
OMGJ01006959
[OMGJ] human gut metagenome; human gut
1936
1851
-
Leu
CAG
[ENA]
¢þ
>WENV183499808
OMGQ01000292
[OMGQ] human gut metagenome; human gut
39706
39792
+
Leu
CAG
[ENA]
¢þ
>WENV183771844
PPYF01000354
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10777
10691
-
Leu
CAG
[ENA]
¢þ
>C181160240
CP027805
Bacillota
Limosilactobacillus reuteri WHH1689 [CP027805]
1332590
1332504
-
Leu
CAG
-
¡û
>C191146519
CP035790
Bacillota
Limosilactobacillus reuteri ATG-F4 [CP035790]
464543
464457
-
Leu
CAG
-
¡û
>W09123436
ACGX01000125
Bacillota
Limosilactobacillus reuteri MM4-1A [ACGX]
16161
16248
+
Leu
CAG
[ENA]
¡û
>W09127499
ACLB01000003
Bacillota
Limosilactobacillus reuteri MM2-3 [ACLB]
16161
16248
+
Leu
CAG
[ENA]
¡û
>W141776710
JOKX01000021
Bacillota
Limosilactobacillus reuteri [JOKX]
381969
382055
+
Leu
CAG
[ENA]
¡û
>W141789648
JOSW01000018
Bacillota
Limosilactobacillus reuteri [JOSW]
40141
40227
+
Leu
CAG
[ENA]
¡û
>W141789715
JOSX01000020
Bacillota
Limosilactobacillus reuteri [JOSX]
207397
207311
-
Leu
CAG
[ENA]
¡û
>C141005344
CP006603
Bacillota
Limosilactobacillus reuteri TD1 [CP006603]
1475763
1475676
-
Leu
CAG
[Ensembl]
¡û
>W1910902684
NGPA01000067
Bacillota
Limosilactobacillus reuteri 609l [NGPA]
22359
22273
-
Leu
CAG
[ENA]
¡û
>W1910902734
NGPB01000014
Bacillota
Limosilactobacillus reuteri 609i [NGPB]
40129
40215
+
Leu
CAG
[ENA]
¡û
>W1910902793
NGPC01000017
Bacillota
Limosilactobacillus reuteri 609e [NGPC]
39763
39849
+
Leu
CAG
[ENA]
¡û
>W1910902919
NGPD01000136
Bacillota
Limosilactobacillus reuteri 609d [NGPD]
21283
21197
-
Leu
CAG
[ENA]
¡û
>W1910902979
NGPE01000151
Bacillota
Limosilactobacillus reuteri 601l [NGPE]
40129
40215
+
Leu
CAG
[ENA]
¡û
>W1910902983
NGPF01000022
Bacillota
Limosilactobacillus reuteri 601g [NGPF]
39946
40032
+
Leu
CAG
[ENA]
¡û
>W1910903088
NGPG01000229
Bacillota
Limosilactobacillus reuteri 601f [NGPG]
6846
6760
-
Leu
CAG
[ENA]
¡û
>W1910903099
NGPH01000016
Bacillota
Limosilactobacillus reuteri 117w [NGPH]
40017
40103
+
Leu
CAG
[ENA]
¡û
>W1910903173
NGPI01000019
Bacillota
Limosilactobacillus reuteri 117r [NGPI]
39982
40068
+
Leu
CAG
[ENA]
¡û
>W1910903231
NGPJ01000013
Bacillota
Limosilactobacillus reuteri 117n [NGPJ]
39982
40068
+
Leu
CAG
[ENA]
¡û
>W1910903298
NGPK01000007
Bacillota
Limosilactobacillus reuteri 114q [NGPK]
39946
40032
+
Leu
CAG
[ENA]
¡û
>W1910903362
NGPL01000011
Bacillota
Limosilactobacillus reuteri 114h [NGPL]
32480
32566
+
Leu
CAG
[ENA]
¡û
>W1910903426
NGPM01000016
Bacillota
Limosilactobacillus reuteri 114g [NGPM]
39763
39849
+
Leu
CAG
[ENA]
¡û
>W1910903489
NGPN01000009
Bacillota
Limosilactobacillus reuteri 111v [NGPN]
40017
40103
+
Leu
CAG
[ENA]
¡û
>W1910903558
NGPO01000024
Bacillota
Limosilactobacillus reuteri 111l [NGPO]
40017
40103
+
Leu
CAG
[ENA]
¡û
>W1910903630
NGPP01000015
Bacillota
Limosilactobacillus reuteri 111f [NGPP]
40163
40249
+
Leu
CAG
[ENA]
¡û
>W1910903698
NGPQ01000012
Bacillota
Limosilactobacillus reuteri 111b [NGPQ]
8736
8650
-
Leu
CAG
[ENA]
¡û
>W1910903762
NGPR01000041
Bacillota
Limosilactobacillus reuteri 107k [NGPR]
40128
40214
+
Leu
CAG
[ENA]
¡û
>W1910903829
NGPS01000063
Bacillota
Limosilactobacillus reuteri 107j [NGPS]
19632
19718
+
Leu
CAG
[ENA]
¡û
>W1910903903
NGPT01000050
Bacillota
Limosilactobacillus reuteri 107e [NGPT]
21222
21136
-
Leu
CAG
[ENA]
¡û
>W1910903993
NGPU01000063
Bacillota
Limosilactobacillus reuteri 105w [NGPU]
20998
20912
-
Leu
CAG
[ENA]
¡û
>W1910904021
NGPV01000021
Bacillota
Limosilactobacillus reuteri 105p [NGPV]
39982
40068
+
Leu
CAG
[ENA]
¡û
>W1910904104
NGPW01000057
Bacillota
Limosilactobacillus reuteri 105o [NGPW]
21299
21213
-
Leu
CAG
[ENA]
¡û
>W1910904147
NGPX01000011
Bacillota
Limosilactobacillus reuteri 105n [NGPX]
21227
21141
-
Leu
CAG
[ENA]
¡û
>W1910904219
NGPY01000012
Bacillota
Limosilactobacillus reuteri 105k [NGPY]
21227
21141
-
Leu
CAG
[ENA]
¡û
>W1910904286
NGPZ01000026
Bacillota
Limosilactobacillus reuteri 105i [NGPZ]
21299
21213
-
Leu
CAG
[ENA]
¡û
>W1910904344
NGQA01000010
Bacillota
Limosilactobacillus reuteri 105d [NGQA]
21299
21213
-
Leu
CAG
[ENA]
¡û
>W1910904414
NGQB01000013
Bacillota
Limosilactobacillus reuteri 105c [NGQB]
21299
21213
-
Leu
CAG
[ENA]
¡û
>W1910904471
NGQC01000019
Bacillota
Limosilactobacillus reuteri 103v [NGQC]
40017
40103
+
Leu
CAG
[ENA]
¡û
>W1910904558
NGQD01000078
Bacillota
Limosilactobacillus reuteri 103p [NGQD]
9497
9583
+
Leu
CAG
[ENA]
¡û
>W1910904622
NGQE01000022
Bacillota
Limosilactobacillus reuteri 103o [NGQE]
38312
38398
+
Leu
CAG
[ENA]
¡û
>W1910904672
NGQF01000010
Bacillota
Limosilactobacillus reuteri 103b [NGQF]
40017
40103
+
Leu
CAG
[ENA]
¡û
>W1910910879
NHMT01000001
Bacillota
Limosilactobacillus reuteri I49 [NHMT]
1856452
1856538
+
Leu
CAG
[ENA]
¡û
>W1911630756
PTLS01000042
Bacillota
Limosilactobacillus reuteri R2lc [PTLS]
20437
20351
-
Leu
CAG
[ENA]
¡û
>W1810472842
QAHC01000012
Bacillota
Limosilactobacillus reuteri DS14_10 [QAHC]
24928
24842
-
Leu
CAG
[ENA]
¡û
>W1810472909
QAHD01000012
Bacillota
Limosilactobacillus reuteri DS13_10 [QAHD]
24153
24067
-
Leu
CAG
[ENA]
¡û
>W1810488689
QAZN01000019
Bacillota
Limosilactobacillus reuteri DS12_10 [QAZN]
2262
2176
-
Leu
CAG
[ENA]
¡û
>W1810597804
QGHP01000032
Bacillota
Limosilactobacillus reuteri LR18 [QGHP]
204
118
-
Leu
CAG
[ENA]
¡û
>W1810597887
QGHQ01000030
Bacillota
Limosilactobacillus reuteri LR17 [QGHQ]
20894
20980
+
Leu
CAG
[ENA]
¡û
>W1810597994
QGHR01000140
Bacillota
Limosilactobacillus reuteri LR13 [QGHR]
182
96
-
Leu
CAG
[ENA]
¡û
>W1810598095
QGHT01000033
Bacillota
Limosilactobacillus reuteri LR10 [QGHT]
204
118
-
Leu
CAG
[ENA]
¡û
>W1810598168
QGHU01000030
Bacillota
Limosilactobacillus reuteri LR4 [QGHU]
20894
20980
+
Leu
CAG
[ENA]
¡û
>W1810598241
QGHV01000095
Bacillota
Limosilactobacillus reuteri LR9 [QGHV]
4098
4013
-
Leu
CAG
[ENA]
¡û
>W1810598304
QGHW01000017
Bacillota
Limosilactobacillus reuteri LR8 [QGHW]
469
383
-
Leu
CAG
[ENA]
¡û
>W1810598533
QGHZ01000118
Bacillota
Limosilactobacillus reuteri LR14 [QGHZ]
182
96
-
Leu
CAG
[ENA]
¡û
>W1810598607
QGIA01000144
Bacillota
Limosilactobacillus reuteri LR11 [QGIA]
182
96
-
Leu
CAG
[ENA]
¡û
>W1810598646
QGIB01000039
Bacillota
Limosilactobacillus reuteri LR3 [QGIB]
20872
20958
+
Leu
CAG
[ENA]
¡û
>W1810598750
QGIC01000146
Bacillota
Limosilactobacillus reuteri LR2 [QGIC]
182
96
-
Leu
CAG
[ENA]
¡û
>W1810598821
QGID01000122
Bacillota
Limosilactobacillus reuteri LR1 [QGID]
182
96
-
Leu
CAG
[ENA]
¡û
>W1810786786
QRDF01000002
Bacillota
Limosilactobacillus reuteri LR CGMCC No.11154 [QRDF]
64358
64272
-
Leu
CAG
[ENA]
¡û
>C151075613
CP011024
Bacillota
Limosilactobacillus reuteri IRT [CP011024]
1326070
1325983
-
Leu
CAG
[Ensembl]
¡û
>W10124116
AEAW01000026
Bacillota
Limosilactobacillus reuteri mlc3 [AEAW]
9919
9833
-
Leu
CAG
[ENA]
¡û
>W10124210
AEAX01000069
Bacillota
Limosilactobacillus reuteri lpuph [AEAX]
791
704
-
Leu
CAG
[ENA]
¡û
>W11130953
AEAW01000026
Bacillota
Limosilactobacillus reuteri mlc3 [AEAW]
9919
9833
-
Leu
CAG
[ENA]
¡û
>W11131047
AEAX01000069
Bacillota
Limosilactobacillus reuteri lpuph [AEAX]
791
704
-
Leu
CAG
[ENA]
¡û
>W11185995
CACS02000071
Bacillota
Limosilactobacillus reuteri ATCC 53608 [CACS]
130473
130386
-
Leu
CAG
[ENA]
¡û
>C161077628
CP014786
Bacillota
Limosilactobacillus reuteri ZLR003 [CP014786]
1942861
1942948
+
Leu
CAG
[Ensembl]
¡û
>C161087530
CP015408
Bacillota
Limosilactobacillus reuteri I49 [CP015408]
957796
957709
-
Leu
CAG
-
¡û
>W121126735
CACS02000071
Bacillota
Limosilactobacillus reuteri ATCC 53608 [CACS]
130473
130386
-
Leu
CAG
[ENA]
¡û
>W1610033673
AZDD01000018
Bacillota
Limosilactobacillus reuteri DSM 20016 [AZDD]
16192
16279
+
Leu
CAG
[ENA]
¡û
>W1610104875
CZDA01000058
Bacillota
Limosilactobacillus reuteri [CZDA]
56344
56257
-
Leu
CAG
[ENA]
¡û
>W1610104927
CZDB01000005
Bacillota
Limosilactobacillus reuteri [CZDB]
103666
103581
-
Leu
CAG
[ENA]
¡û
>C131016725
CP006011
Bacillota
Limosilactobacillus reuteri I5007 [CP006011]
703571
703658
+
Leu
CAG
[Ensembl]
¡û
>W1611022808
LYWI01000021
Bacillota
Limosilactobacillus reuteri [LYWI]
117545
117632
+
Leu
CAG
[ENA]
¡û
>W1710030851
AZDD01000018
Bacillota
Limosilactobacillus reuteri DSM 20016 [AZDD]
16192
16279
+
Leu
CAG
[ENA]
¡û
>W1710107579
CZDA01000058
Bacillota
Limosilactobacillus reuteri [CZDA]
56344
56257
-
Leu
CAG
[ENA]
¡û
>W1710107631
CZDB01000005
Bacillota
Limosilactobacillus reuteri [CZDB]
103666
103581
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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