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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59727 (132 seq.)
>W1711229974
LXZG01000082
Bacillota
Ligilactobacillus salivarius [LXZG]
23875
23790
-
Leu
CAG
[ENA]
¡û
>W1711687584
MSCR01000015
Bacillota
Ligilactobacillus salivarius [MSCR]
17874
17789
-
Leu
CAG
[ENA]
¡û
>W1711943467
NBDX01000007
Bacillota
Ligilactobacillus salivarius [NBDX]
12081
11996
-
Leu
CAG
[ENA]
¡û
>W1711943518
NBDY01000008
Bacillota
Ligilactobacillus salivarius [NBDY]
14582
14497
-
Leu
CAG
[ENA]
¡û
>W1711943547
NBDZ01000008
Bacillota
Ligilactobacillus salivarius [NBDZ]
17103
17018
-
Leu
CAG
[ENA]
¡û
>W1711943583
NBEA01000015
Bacillota
Ligilactobacillus salivarius [NBEA]
322986
323071
+
Leu
CAG
[ENA]
¡û
>W1711943629
NBEB01000029
Bacillota
Ligilactobacillus salivarius [NBEB]
1213
1128
-
Leu
CAG
[ENA]
¡û
>W1711943681
NBEC01000031
Bacillota
Ligilactobacillus salivarius [NBEC]
1213
1128
-
Leu
CAG
[ENA]
¡û
>W1711943727
NBED01000013
Bacillota
Ligilactobacillus salivarius [NBED]
252
167
-
Leu
CAG
[ENA]
¡û
>W1711943763
NBEE01000010
Bacillota
Ligilactobacillus salivarius [NBEE]
13556
13471
-
Leu
CAG
[ENA]
¡û
>W1711943806
NBEF01000014
Bacillota
Ligilactobacillus salivarius [NBEF]
16634
16549
-
Leu
CAG
[ENA]
¡û
>W1711943860
NBEG01000011
Bacillota
Ligilactobacillus salivarius [NBEG]
12654
12569
-
Leu
CAG
[ENA]
¡û
>W1711943899
NBEH01000009
Bacillota
Ligilactobacillus salivarius [NBEH]
17278
17193
-
Leu
CAG
[ENA]
¡û
>W1711943944
NBEI01000011
Bacillota
Ligilactobacillus salivarius [NBEI]
17270
17185
-
Leu
CAG
[ENA]
¡û
>W1711943995
NBEJ01000008
Bacillota
Ligilactobacillus salivarius [NBEJ]
17144
17059
-
Leu
CAG
[ENA]
¡û
>W1711944048
NBEK01000010
Bacillota
Ligilactobacillus salivarius [NBEK]
18283
18198
-
Leu
CAG
[ENA]
¡û
>W1711944086
NBEL01000008
Bacillota
Ligilactobacillus salivarius [NBEL]
18338
18253
-
Leu
CAG
[ENA]
¡û
>W1711944136
NBEM01000005
Bacillota
Ligilactobacillus salivarius [NBEM]
17294
17209
-
Leu
CAG
[ENA]
¡û
>W1711944193
NBEN01000006
Bacillota
Ligilactobacillus salivarius [NBEN]
17743
17658
-
Leu
CAG
[ENA]
¡û
>W1711944230
NBEO01000008
Bacillota
Ligilactobacillus salivarius [NBEO]
256
171
-
Leu
CAG
[ENA]
¡û
>W1711944272
NBEP01000028
Bacillota
Ligilactobacillus salivarius [NBEP]
198
113
-
Leu
CAG
[ENA]
¡û
>W1711944319
NBEQ01000008
Bacillota
Ligilactobacillus salivarius [NBEQ]
11062
10977
-
Leu
CAG
[ENA]
¡û
>W1711944378
NBER01000016
Bacillota
Ligilactobacillus salivarius [NBER]
2702
2617
-
Leu
CAG
[ENA]
¡û
>W1711944422
NBES01000019
Bacillota
Ligilactobacillus salivarius [NBES]
13330
13245
-
Leu
CAG
[ENA]
¡û
>W1711944468
NBET01000014
Bacillota
Ligilactobacillus salivarius [NBET]
15001
14916
-
Leu
CAG
[ENA]
¡û
>W1711944511
NBEU01000007
Bacillota
Ligilactobacillus salivarius [NBEU]
59458
59373
-
Leu
CAG
[ENA]
¡û
>W1711944554
NBEV01000015
Bacillota
Ligilactobacillus salivarius [NBEV]
11448
11363
-
Leu
CAG
[ENA]
¡û
>W1711944608
NBEW01000023
Bacillota
Ligilactobacillus salivarius [NBEW]
2702
2617
-
Leu
CAG
[ENA]
¡û
>W1711944644
NBEX01000028
Bacillota
Ligilactobacillus salivarius [NBEX]
2702
2617
-
Leu
CAG
[ENA]
¡û
>W1711944685
NBEY01000024
Bacillota
Ligilactobacillus salivarius [NBEY]
2702
2617
-
Leu
CAG
[ENA]
¡û
>W1712035991
NFHF01000018
Bacillota
Ligilactobacillus salivarius [NFHF]
33634
33719
+
Leu
CAG
[ENA]
¡û
>W1712036913
NFHV01000014
Bacillota
Ligilactobacillus salivarius [NFHV]
18100
18015
-
Leu
CAG
[ENA]
¡û
>W1712041970
NFLK01000009
Bacillota
Ligilactobacillus salivarius [NFLK]
19925
19840
-
Leu
CAG
[ENA]
¡û
>C171057113
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
49371
49456
+
Leu
CAG
-
¡û
>C171113766
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1376639
1376724
+
Leu
CAG
-
¡û
>C171129022
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1369668
1369583
-
Leu
CAG
-
¡û
>C012737
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
497941
497858
-
Leu
CAG
[Ensembl]
¡û
>WENV181427961
OGCU01000471
[OGCU] metagenome; Human gut stool
5596
5511
-
Leu
CAG
[ENA]
¢þ
>WENV181428633
OGCW01000012
[OGCW] metagenome; Human gut stool
17634
17549
-
Leu
CAG
[ENA]
¢þ
>WENV181429146
OGCX01000057
[OGCX] metagenome; Human gut stool
58078
58163
+
Leu
CAG
[ENA]
¢þ
>WENV181457083
OGEH01006145
[OGEH] metagenome; Human gut stool
475
560
+
Leu
CAG
[ENA]
¢þ
>WENV181457887
OGEJ01000014
[OGEJ] metagenome; Human gut stool
17515
17430
-
Leu
CAG
[ENA]
¢þ
>WENV181465482
OGEP01052893
[OGEP] metagenome; Human gut stool
92
177
+
Leu
CAG
[ENA]
¢þ
>WENV181468186
OGES01000775
[OGES] metagenome; Human gut stool
16847
16762
-
Leu
CAG
[ENA]
¢þ
>WENV181483367
OGFK01003053
[OGFK] metagenome; Human gut stool
3632
3717
+
Leu
CAG
[ENA]
¢þ
>WENV181484346
OGFL01001786
[OGFL] metagenome; Human gut stool
5484
5399
-
Leu
CAG
[ENA]
¢þ
>WENV181493169
OGFZ01010253
[OGFZ] metagenome; Human gut stool
780
695
-
Leu
CAG
[ENA]
¢þ
>WENV181494154
OGGB01000308
[OGGB] metagenome; Human gut stool
13476
13391
-
Leu
CAG
[ENA]
¢þ
>WENV181501747
OGGI01001365
[OGGI] metagenome; Human gut stool
1277
1362
+
Leu
CAG
[ENA]
¢þ
>WENV181505970
OGGM01000014
[OGGM] metagenome; Human gut stool
172806
172891
+
Leu
CAG
[ENA]
¢þ
>WENV181517648
OGGZ01016433
[OGGZ] metagenome; Human gut stool
589
504
-
Leu
CAG
[ENA]
¢þ
>WENV181518632
OGHB01000008
[OGHB] metagenome; Human gut stool
13895
13810
-
Leu
CAG
[ENA]
¢þ
>WENV181525059
OGHJ01000002
[OGHJ] metagenome; Human gut stool
436053
436138
+
Leu
CAG
[ENA]
¢þ
>WENV181532576
OGHP01004788
[OGHP] metagenome; Human gut stool
1215
1130
-
Leu
CAG
[ENA]
¢þ
>WENV181537266
OGHW01004392
[OGHW] metagenome; Human gut stool
2400
2315
-
Leu
CAG
[ENA]
¢þ
>WENV181539107
OGHZ01001393
[OGHZ] metagenome; Human gut stool
7489
7404
-
Leu
CAG
[ENA]
¢þ
>WENV181541041
OGIC01000831
[OGIC] metagenome; Human gut stool
1503
1588
+
Leu
CAG
[ENA]
¢þ
>WENV181550640
OGIN01000015
[OGIN] metagenome; Human gut stool
17500
17415
-
Leu
CAG
[ENA]
¢þ
>WENV181556555
OGIV01000002
[OGIV] metagenome; Human gut stool
262538
262623
+
Leu
CAG
[ENA]
¢þ
>WENV181558264
OGIX01000118
[OGIX] metagenome; Human gut stool
13616
13531
-
Leu
CAG
[ENA]
¢þ
>WENV181563331
OGJG01018804
[OGJG] metagenome; Human gut stool
203
288
+
Leu
CAG
[ENA]
¢þ
>WENV181570723
OGJO01000002
[OGJO] metagenome; Human gut stool
14252
14167
-
Leu
CAG
[ENA]
¢þ
>WENV181576455
OGJV01008331
[OGJV] metagenome; Human gut stool
1265
1180
-
Leu
CAG
[ENA]
¢þ
>WENV181581899
OGKB01000058
[OGKB] metagenome; Human gut stool
83939
84024
+
Leu
CAG
[ENA]
¢þ
>WENV181587810
OGKH01000014
[OGKH] metagenome; Human gut stool
13456
13371
-
Leu
CAG
[ENA]
¢þ
>WENV181588559
OGKJ01000023
[OGKJ] metagenome; Human gut stool
66350
66435
+
Leu
CAG
[ENA]
¢þ
>WENV181589678
OGKM01000012
[OGKM] metagenome; Human gut stool
15156
15071
-
Leu
CAG
[ENA]
¢þ
>WENV181993161
OHAS01000089
[OHAS] human gut metagenome; faeces
17465
17380
-
Leu
CAG
[ENA]
¢þ
>WENV182009691
OHBJ01033538
[OHBJ] human gut metagenome; faeces
1146
1061
-
Leu
CAG
[ENA]
¢þ
>W141256113
CBVR010000004
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
69225
69310
+
Leu
CAG
[ENA]
¡û
>WENV182952726
OKVW01012522
[OKVW] human gut metagenome; human gut
1006
921
-
Leu
CAG
[ENA]
¢þ
>WENV182954591
OKWA01006027
[OKWA] human gut metagenome; human gut
2034
1949
-
Leu
CAG
[ENA]
¢þ
>WENV183022928
OLFR01029411
[OLFR] human gut metagenome; human gut
431
516
+
Leu
CAG
[ENA]
¢þ
>WENV183131915
OLOB01000143
[OLOB] human gut metagenome; faeces
2697
2612
-
Leu
CAG
[ENA]
¢þ
>WENV183179812
OLPH01018120
[OLPH] human gut metagenome; faeces
1401
1316
-
Leu
CAG
[ENA]
¢þ
>WENV183205838
OLPZ01054453
[OLPZ] human gut metagenome; faeces
460
545
+
Leu
CAG
[ENA]
¢þ
>WENV183218005
OLQI01007023
[OLQI] human gut metagenome; faeces
2697
2612
-
Leu
CAG
[ENA]
¢þ
>WENV183407116
OMAC01000041
[OMAC] human gut metagenome; feces
120002
120087
+
Leu
CAG
[ENA]
¢þ
>WENV183427378
OMBN01000002
[OMBN] human gut metagenome; feces
375279
375364
+
Leu
CAG
[ENA]
¢þ
>WENV183428626
OMBO01000085
[OMBO] human gut metagenome; feces
83731
83816
+
Leu
CAG
[ENA]
¢þ
>WENV183472630
OMER01000003
[OMER] human gut metagenome; feces
281684
281769
+
Leu
CAG
[ENA]
¢þ
>WENV183493656
OMGJ01000946
[OMGJ] human gut metagenome; human gut
4707
4792
+
Leu
CAG
[ENA]
¢þ
>WENV183605932
OODN01000132
[OODN] human gut metagenome; human gut
247
162
-
Leu
CAG
[ENA]
¢þ
>WENV183788932
PPYF01371395
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1
84
+
Leu
CAG
[ENA]
¢þ
>WENV183788945
PPYF01371718
[PPYF] human gut metagenome; stool from patient with Crohn's disease
5601
5518
-
Leu
CAG
[ENA]
¢þ
>C181182043
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1452921
1452836
-
Leu
CAG
-
¡û
>W09123159
ACGT01000001
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
18990
18905
-
Leu
CAG
[ENA]
¡û
>W1910649415
LXYX01000122
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
22825
22740
-
Leu
CAG
[ENA]
¡û
>W1910649470
LXYY01000014
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
23813
23728
-
Leu
CAG
[ENA]
¡û
>W1910649525
LXYZ01000076
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
22582
22497
-
Leu
CAG
[ENA]
¡û
>W1910649589
LXZA01000046
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
1898
1813
-
Leu
CAG
[ENA]
¡û
>W1910649634
LXZB01000043
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
1898
1813
-
Leu
CAG
[ENA]
¡û
>W1910649692
LXZC01000012
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
23236
23151
-
Leu
CAG
[ENA]
¡û
>W1910649761
LXZD01000168
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
12403
12488
+
Leu
CAG
[ENA]
¡û
>W1910649803
LXZE01000164
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
14547
14462
-
Leu
CAG
[ENA]
¡û
>W1910649836
LXZF01000020
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
12317
12402
+
Leu
CAG
[ENA]
¡û
>W1910649894
LXZH01000036
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
12314
12399
+
Leu
CAG
[ENA]
¡û
>W1910649988
LXZJ01000083
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
10707
10792
+
Leu
CAG
[ENA]
¡û
>W1910650027
LXZK01000033
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
12311
12396
+
Leu
CAG
[ENA]
¡û
>W1910650070
LXZL01000052
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
7650
7565
-
Leu
CAG
[ENA]
¡û
>W1910650136
LXZM01000072
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
12322
12407
+
Leu
CAG
[ENA]
¡û
>W1910650191
LXZO01000096
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
13397
13312
-
Leu
CAG
[ENA]
¡û
>W1910650231
LXZP01000026
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
13407
13322
-
Leu
CAG
[ENA]
¡û
>W1910650303
LXZQ01000038
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
12316
12401
+
Leu
CAG
[ENA]
¡û
>W1910650358
LXZR01000034
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
14645
14560
-
Leu
CAG
[ENA]
¡û
>W1910650413
LXZS01000028
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
14630
14545
-
Leu
CAG
[ENA]
¡û
>W1910650481
LXZT01000035
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
13400
13315
-
Leu
CAG
[ENA]
¡û
>W1910874555
NDYW01000029
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
19725
19640
-
Leu
CAG
[ENA]
¡û
>W1911569775
PCZA01000011
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
913
828
-
Leu
CAG
[ENA]
¡û
>W1911570171
PCZH01000001
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
154517
154602
+
Leu
CAG
[ENA]
¡û
>W1810070410
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1270736
1270821
+
Leu
CAG
[ENA]
¡û
>W1810185984
PKGN01000049
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
16448
16363
-
Leu
CAG
[ENA]
¡û
>W1810472380
QAGU01000001
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
19117
19032
-
Leu
CAG
[ENA]
¡û
>W1810472426
QAGV01000001
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
503601
503686
+
Leu
CAG
[ENA]
¡û
>W1810488187
QAZF01000001
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
456630
456715
+
Leu
CAG
[ENA]
¡û
>W1810488258
QAZG01000003
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
154728
154813
+
Leu
CAG
[ENA]
¡û
>W1810584335
QFAS01000004
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
15511
15426
-
Leu
CAG
[ENA]
¡û
>W1810797371
QRMK01000023
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
19648
19563
-
Leu
CAG
[ENA]
¡û
>W1810829782
QSLH01000001
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
14188
14103
-
Leu
CAG
[ENA]
¡û
>W1810838180
QSTB01000008
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
18020
17935
-
Leu
CAG
[ENA]
¡û
>C151030967
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
488875
488790
-
Leu
CAG
[Ensembl]
¡û
>C151082346
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
497440
497355
-
Leu
CAG
[Ensembl]
¡û
>W10124269
AEBA01000085
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
2639
2554
-
Leu
CAG
[ENA]
¡û
>C10109082
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
498533
498448
-
Leu
CAG
[Ensembl]
¡û
>W1511441048
JUQA01000025
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
58750
58835
+
Leu
CAG
[ENA]
¡û
>W1511443801
JUTI01000002
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
11054
10969
-
Leu
CAG
[ENA]
¡û
>W1511448793
JVAF01000030
Bacillota
Ligilactobacillus salivarius 609_LSAL [JVAF]
31107
31192
+
Leu
CAG
[ENA]
¡û
>W11131156
AEBA01000085
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
2639
2554
-
Leu
CAG
[ENA]
¡û
>W11167225
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
984199
984114
-
Leu
CAG
[ENA]
¡û
>W11168596
AFOI01000004
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
468141
468226
+
Leu
CAG
[ENA]
¡û
>W121045146
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
680447
680362
-
Leu
CAG
[ENA]
¡û
>W1610031403
AYYT01000003
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
17316
17231
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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