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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59810 (66 seq.)
>W131217852
ATXE01000001
Actinomycetota
Aestuariimicrobium kwangyangense DSM 21549 [ATXE]
641250
641337
+
Ser
CGA
[ENA]
¡û
>WENV180729003
ODGU01149679
[ODGU] human metagenome; G_DNA_Supragingival plaque
334
421
+
Ser
CGA
[ENA]
¢þ
>WENV180732066
ODGW01098814
[ODGW] human metagenome; G_DNA_Supragingival plaque
118
31
-
Ser
CGA
[ENA]
¢þ
>WENV180735329
ODGZ01153910
[ODGZ] human metagenome; G_DNA_Supragingival plaque
88
1
-
Ser
CGA
[ENA]
¢þ
>WENV180735673
ODHB01000238
[ODHB] human metagenome; G_DNA_Supragingival plaque
19518
19603
+
Ser
CGA
[ENA]
¢þ
>WENV180750156
ODHS01000564
[ODHS] human metagenome; G_DNA_Supragingival plaque
19559
19644
+
Ser
CGA
[ENA]
¢þ
>WENV180755116
ODHU01018097
[ODHU] human metagenome; G_DNA_Supragingival plaque
127
42
-
Ser
CGA
[ENA]
¢þ
>WENV180777415
ODIL01004594
[ODIL] human metagenome; G_DNA_Supragingival plaque
231
316
+
Ser
CGA
[ENA]
¢þ
>WENV180782126
ODIP01023548
[ODIP] human metagenome; G_DNA_Supragingival plaque
553
466
-
Ser
CGA
[ENA]
¢þ
>WENV180788507
ODIS01070220
[ODIS] human metagenome; G_DNA_Supragingival plaque
160
73
-
Ser
CGA
[ENA]
¢þ
>WENV180797350
ODJB01048978
[ODJB] human metagenome; G_DNA_Supragingival plaque
478
565
+
Ser
CGA
[ENA]
¢þ
>WENV180805245
ODJG01114403
[ODJG] human metagenome; G_DNA_Supragingival plaque
246
331
+
Ser
CGA
[ENA]
¢þ
>WENV180814145
ODJO01008124
[ODJO] human metagenome; G_DNA_Supragingival plaque
693
778
+
Ser
CGA
[ENA]
¢þ
>WENV180823061
ODJW01003578
[ODJW] human metagenome; G_DNA_Supragingival plaque
2805
2718
-
Ser
CGA
[ENA]
¢þ
>WENV180832688
ODKC01003193
[ODKC] human metagenome; G_DNA_Supragingival plaque
369
456
+
Ser
CGA
[ENA]
¢þ
>WENV180834078
ODKD01002497
[ODKD] human metagenome; G_DNA_Supragingival plaque
3035
2948
-
Ser
CGA
[ENA]
¢þ
>WENV180835650
ODKE01007176
[ODKE] human metagenome; G_DNA_Supragingival plaque
1068
1155
+
Ser
CGA
[ENA]
¢þ
>WENV180847212
ODKT01051678
[ODKT] human metagenome; G_DNA_Supragingival plaque
838
925
+
Ser
CGA
[ENA]
¢þ
>WENV180859604
ODLD01001850
[ODLD] human metagenome; G_DNA_Supragingival plaque
478
565
+
Ser
CGA
[ENA]
¢þ
>WENV180922300
ODTJ01002462
[ODTJ] human metagenome; G_DNA_Supragingival plaque
9754
9667
-
Ser
CGA
[ENA]
¢þ
>WENV180924148
ODTK01001420
[ODTK] human metagenome; G_DNA_Supragingival plaque
324
411
+
Ser
CGA
[ENA]
¢þ
>WENV180927466
ODTM01000709
[ODTM] human metagenome; G_DNA_Supragingival plaque
333
420
+
Ser
CGA
[ENA]
¢þ
>WENV180928747
ODTM01218643
[ODTM] human metagenome; G_DNA_Supragingival plaque
89
2
-
Ser
CGA
[ENA]
¢þ
>WENV180933530
ODTR01000428
[ODTR] human metagenome; G_DNA_Supragingival plaque
2100
2015
-
Ser
CGA
[ENA]
¢þ
>WENV180934501
ODTS01000197
[ODTS] human metagenome; G_DNA_Subgingival plaque
4639
4554
-
Ser
CGA
[ENA]
¢þ
>WENV180939035
ODTX01013277
[ODTX] human metagenome; G_DNA_Supragingival plaque
2158
2245
+
Ser
CGA
[ENA]
¢þ
>WENV180940161
ODTX01285725
[ODTX] human metagenome; G_DNA_Supragingival plaque
88
1
-
Ser
CGA
[ENA]
¢þ
>WENV180944960
ODUC01052053
[ODUC] human metagenome; G_DNA_Supragingival plaque
211
124
-
Ser
CGA
[ENA]
¢þ
>WENV180958523
ODUL01007434
[ODUL] human metagenome; G_DNA_Supragingival plaque
1490
1405
-
Ser
CGA
[ENA]
¢þ
>WENV180963989
ODUO01000071
[ODUO] human metagenome; G_DNA_Supragingival plaque
72211
72296
+
Ser
CGA
[ENA]
¢þ
>WENV180973109
ODUW01001237
[ODUW] human metagenome; G_DNA_Supragingival plaque
5004
4917
-
Ser
CGA
[ENA]
¢þ
>WENV180980583
ODVE01000605
[ODVE] human metagenome; G_DNA_Supragingival plaque
15120
15033
-
Ser
CGA
[ENA]
¢þ
>WENV180982595
ODVF01000139
[ODVF] human metagenome; G_DNA_Supragingival plaque
39103
39016
-
Ser
CGA
[ENA]
¢þ
>WENV180999723
ODVT01054801
[ODVT] human metagenome; G_DNA_Buccal mucosa
103
190
+
Ser
CGA
[ENA]
¢þ
>WENV181002442
ODVX01000392
[ODVX] human metagenome; G_DNA_Supragingival plaque
32603
32516
-
Ser
CGA
[ENA]
¢þ
>WENV181007840
ODWE01000847
[ODWE] human metagenome; G_DNA_Supragingival plaque
19581
19666
+
Ser
CGA
[ENA]
¢þ
>WENV181009876
ODWE01272560
[ODWE] human metagenome; G_DNA_Supragingival plaque
88
1
-
Ser
CGA
[ENA]
¢þ
>WENV181049798
ODYD01002170
[ODYD] human metagenome; G_DNA_Supragingival plaque
5856
5769
-
Ser
CGA
[ENA]
¢þ
>WENV181063435
ODYP01000766
[ODYP] human metagenome; G_DNA_Supragingival plaque
12347
12260
-
Ser
CGA
[ENA]
¢þ
>WENV181067113
ODZI01006895
[ODZI] human metagenome; G_DNA_Supragingival plaque
1052
1139
+
Ser
CGA
[ENA]
¢þ
>WENV181070777
OEAE01009489
[OEAE] human metagenome; G_DNA_Supragingival plaque
1757
1672
-
Ser
CGA
[ENA]
¢þ
>WENV181077194
OEAP01031718
[OEAP] human metagenome; G_DNA_Supragingival plaque
956
869
-
Ser
CGA
[ENA]
¢þ
>WENV181082000
OEAS01542473
[OEAS] human metagenome; G_DNA_Supragingival plaque
86
1
-
Ser
CGA
[ENA]
¢þ
>WENV181082584
OEAV01000100
[OEAV] human metagenome; G_DNA_Supragingival plaque
42900
42813
-
Ser
CGA
[ENA]
¢þ
>WENV181092105
OEBC01239049
[OEBC] human metagenome; G_DNA_Supragingival plaque
77
164
+
Ser
CGA
[ENA]
¢þ
>WENV181122012
OEFL01047870
[OEFL] human metagenome; G_DNA_Supragingival plaque
438
351
-
Ser
CGA
[ENA]
¢þ
>WENV181137938
OEGJ01047369
[OEGJ] human metagenome; G_DNA_Supragingival plaque
575
488
-
Ser
CGA
[ENA]
¢þ
>WENV181146300
OEHQ01002834
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5641
5554
-
Ser
CGA
[ENA]
¢þ
>WENV181152673
OEIA01003862
[OEIA] human metagenome; G_DNA_Supragingival plaque
5453
5366
-
Ser
CGA
[ENA]
¢þ
>WENV181156361
OEIE01011138
[OEIE] human metagenome; G_DNA_Supragingival plaque
1937
2024
+
Ser
CGA
[ENA]
¢þ
>WENV181160868
OEIK01048868
[OEIK] human metagenome; G_DNA_Supragingival plaque
272
185
-
Ser
CGA
[ENA]
¢þ
>WENV181177612
OEJS01007173
[OEJS] human metagenome; G_DNA_Supragingival plaque
343
428
+
Ser
CGA
[ENA]
¢þ
>WENV181179418
OEJT01004636
[OEJT] human metagenome; G_DNA_Supragingival plaque
1720
1807
+
Ser
CGA
[ENA]
¢þ
>WENV181181828
OEJV01000343
[OEJV] human metagenome; G_DNA_Supragingival plaque
7566
7479
-
Ser
CGA
[ENA]
¢þ
>WENV183508567
OMHE01001468
[OMHE] human oral metagenome; human oral
213
126
-
Ser
CGA
[ENA]
¢þ
>WENV183509333
OMHH01010636
[OMHH] human oral metagenome; human oral
397
484
+
Ser
CGA
[ENA]
¢þ
>C181218248
LT576032
Actinomycetota
Propionibacterium freudenreichii [LT576032]
445938
446025
+
Ser
CGA
-
¡û
>C181218580
LT593929
Actinomycetota
Propionibacterium freudenreichii [LT593929]
428843
428930
+
Ser
CGA
-
¡û
>C181219249
LT618780
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
425893
425980
+
Ser
CGA
-
¡û
>C181219646
LT618790
Actinomycetota
Propionibacterium freudenreichii [LT618789, LT618790]
478615
478702
+
Ser
CGA
-
¡û
>C191173840
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
3166145
3166058
-
Ser
CGA
-
¡û
>C191210855
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
3136734
3136647
-
Ser
CGA
-
¡û
>C191214570
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
3076028
3075941
-
Ser
CGA
-
¡û
>C121002947
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
3178474
3178387
-
Ser
CGA
[Ensembl]
¡û
>W1610074487
BCWS01000003
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
166523
166610
+
Ser
CGA
[ENA]
¡û
>W1710071605
BCWS01000003
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
166523
166610
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK