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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59961 (72 seq.)
>W131249945
CAUE01000075
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
2304
2221
-
Leu
CAG
[ENA]
¡û
>C171071272
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
914763
914846
+
Leu
CAG
-
¡û
>C171073892
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
798173
798090
-
Leu
CAG
-
¡û
>C171110902
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
914757
914840
+
Leu
CAG
-
¡û
>C005220
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
940995
941078
+
Leu
CAG
[Ensembl]
¡û
>w024146
AAYJ01000006
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
24302
24388
+
Leu
CAG
[ENA]
¡û
>w020061
AAUP01000002
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
101392
101306
-
Leu
CAG
[ENA]
¡û
>w016758
AAQO01000011
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
24302
24388
+
Leu
CAG
[ENA]
¡û
>w016623
AAQI01000003
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
222966
223052
+
Leu
CAG
[ENA]
¡û
>WENV001635
AACY020046300
Marine microbial communities from Global Ocean Sampling (GOS)
3732
3644
-
Leu
CAG
[ENA]
>W141027233
AKYP01000080
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
2270
2187
-
Leu
CAG
[ENA]
¡û
>WENV180364046
OBNZ01063316
[OBNZ] marine metagenome; ENVO:00002010
236
150
-
Leu
CAG
[ENA]
¢þ
>WENV180366952
OBOE01000674
[OBOE] marine metagenome; ENVO:00002010
1799
1885
+
Leu
CAG
[ENA]
¢þ
>WENV180389156
OBPI01045784
[OBPI] marine metagenome; Sterile flask
269
183
-
Leu
CAG
[ENA]
¢þ
>WENV180594169
OCOY01074939
[OCOY] marine metagenome; ENVO:00002010
1
87
+
Leu
CAG
[ENA]
¢þ
>C08003026
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
1032348
1032265
-
Leu
CAG
[Ensembl]
¡û
>C08003066
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
840572
840489
-
Leu
CAG
[Ensembl]
¡û
>WENV182565677
OJEH01024744
[OJEH] seawater metagenome; Sea water
778
864
+
Leu
CAG
[ENA]
¢þ
>W141254769
CBTH010000003
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
604701
604784
+
Leu
CAG
[ENA]
¡û
>WENV182570596
OJFC01037481
[OJFC] seawater metagenome; Sea water
82
168
+
Leu
CAG
[ENA]
¢þ
>WENV182589461
OJID01004679
[OJID] seawater metagenome; Sea water
602
688
+
Leu
CAG
[ENA]
¢þ
>WENV182594514
OJIV01025456
[OJIV] seawater metagenome; Sea water
492
578
+
Leu
CAG
[ENA]
¢þ
>W141260663
CCAH010000011
Gammaproteobacteria
Coxiella burnetii [CCAH]
270731
270814
+
Leu
CAG
[ENA]
¡û
>W141260706
CCAI010000013
Gammaproteobacteria
Coxiella burnetii [CCAI]
193332
193415
+
Leu
CAG
[ENA]
¡û
>W141260748
CCAJ010000028
Gammaproteobacteria
Coxiella burnetii [CCAJ]
71165
71248
+
Leu
CAG
[ENA]
¡û
>W141260786
CCAK010000060
Gammaproteobacteria
Coxiella burnetii [CCAK]
12363
12280
-
Leu
CAG
[ENA]
¡û
>W141260840
CCAL010000011
Gammaproteobacteria
Coxiella burnetii [CCAL]
271665
271748
+
Leu
CAG
[ENA]
¡û
>W141260883
CCAM010000033
Gammaproteobacteria
Coxiella burnetii [CCAM]
15397
15480
+
Leu
CAG
[ENA]
¡û
>W141267609
CCNR01000044
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
46503
46420
-
Leu
CAG
[ENA]
¡û
>WENV170948447
MEHZ011196532
[MEHZ] marine metagenome; marine surface water
497
583
+
Leu
CAG
[ENA]
¢þ
>C191091544
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
1583377
1583460
+
Leu
CAG
-
¡û
>C191134923
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1199429
1199512
+
Leu
CAG
-
¡û
>C191174659
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
914624
914707
+
Leu
CAG
-
¡û
>W141810538
JPVV01000021
Gammaproteobacteria
Coxiella burnetii [JPVV]
2377
2294
-
Leu
CAG
[ENA]
¡û
>C09103003
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
984367
984284
-
Leu
CAG
[Ensembl]
¡û
>C09103044
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
798180
798097
-
Leu
CAG
[Ensembl]
¡û
>W1910729065
MGYC01000035
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_41_20 [MGYC]
19733
19648
-
Leu
CAG
[ENA]
¡û
>W1911118959
NOLM01000017
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
78251
78168
-
Leu
CAG
[ENA]
¡û
>W1911119001
NOLN01000016
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
77920
77837
-
Leu
CAG
[ENA]
¡û
>W1911119047
NOLO01000008
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
270342
270425
+
Leu
CAG
[ENA]
¡û
>W1911119085
NOLP01000028
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
46591
46508
-
Leu
CAG
[ENA]
¡û
>W1911119131
NOLQ01000008
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
270341
270424
+
Leu
CAG
[ENA]
¡û
>W1911119173
NOLR01000011
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
270614
270697
+
Leu
CAG
[ENA]
¡û
>W1911119215
NOLS01000008
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
270396
270479
+
Leu
CAG
[ENA]
¡û
>W1911119257
NOLT01000008
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
270396
270479
+
Leu
CAG
[ENA]
¡û
>W1911119299
NOLU01000009
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
254721
254804
+
Leu
CAG
[ENA]
¡û
>W1911119341
NOLV01000008
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
270396
270479
+
Leu
CAG
[ENA]
¡û
>W1911136640
NOVF01000008
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
270395
270478
+
Leu
CAG
[ENA]
¡û
>W1911136682
NOVG01000009
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
270227
270310
+
Leu
CAG
[ENA]
¡û
>W1911136724
NOVH01000009
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
254351
254434
+
Leu
CAG
[ENA]
¡û
>W1911136766
NOVI01000019
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
73897
73814
-
Leu
CAG
[ENA]
¡û
>W1911136808
NOVJ01000008
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
270342
270425
+
Leu
CAG
[ENA]
¡û
>W1911136850
NOVK01000008
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
270342
270425
+
Leu
CAG
[ENA]
¡û
>SRA1001703
SRR001308.4911
Metagenomic characterization of a wastewater treatment plant (SRP000180)
70
154
+
Leu
CAG
[SRA]
>W1810059830
PDLP01000002
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
75197
75280
+
Leu
CAG
[ENA]
¡û
>SRA1002031
SRR001308.197188
Metagenomic characterization of a wastewater treatment plant (SRP000180)
70
154
+
Leu
CAG
[SRA]
>SRA1002034
SRR001308.197725
Metagenomic characterization of a wastewater treatment plant (SRP000180)
70
154
+
Leu
CAG
[SRA]
>W1810235663
PPFM01000001
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
270603
270686
+
Leu
CAG
[ENA]
¡û
>W1810235707
PPFN01000001
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
77102
77019
-
Leu
CAG
[ENA]
¡û
>W1810235747
PPFO01000001
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
270604
270687
+
Leu
CAG
[ENA]
¡û
>W1810235812
PPFP01000044
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
15356
15439
+
Leu
CAG
[ENA]
¡û
>W1810235831
PPFQ01000001
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
270604
270687
+
Leu
CAG
[ENA]
¡û
>W1810235873
PPFR01000001
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
2347
2264
-
Leu
CAG
[ENA]
¡û
>C151077702
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
1061175
1061260
+
Leu
CAG
[Ensembl]
¡û
>C151102374
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
941057
941140
+
Leu
CAG
-
¡û
>W1510060765
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
237773
237690
-
Leu
CAG
[ENA]
¡û
>W1510061129
CCYB01000044
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
46503
46420
-
Leu
CAG
[ENA]
¡û
>W1510064628
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1000854
1000937
+
Leu
CAG
[ENA]
¡û
>W1511555122
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
789942
789859
-
Leu
CAG
[ENA]
¡û
>C161017364
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
795727
795644
-
Leu
CAG
[Ensembl]
¡û
>C161059050
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
1583488
1583571
+
Leu
CAG
-
¡û
>C161071915
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
1494998
1495081
+
Leu
CAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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