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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.59984 (97 seq.)
>W1710805016
LJZR01000001
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
136633
136719
+
Leu
CAG
[ENA]
¡û
>W131036296
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
4964479
4964565
+
Leu
CAG
[ENA]
¡û
>W1711190039
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
84108
84025
-
Leu
CAG
[ENA]
¡û
>W1711229696
LXYR01000011
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
34053
33967
-
Leu
CAG
[ENA]
¡û
>W1711335876
MBRF01000008
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
110034
109951
-
Leu
CAG
[ENA]
¡û
>W1711509523
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
4703271
4703354
+
Leu
CAG
[ENA]
¡û
>W1711509555
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
2398579
2398662
+
Leu
CAG
[ENA]
¡û
>W1711584842
MNYZ01000002
Cyanobacteriota
Oscillatoriales cyanobacterium CG2_30_40_61 [MNYZ]
39324
39241
-
Leu
CAG
[ENA]
¡û
>W1711629775
MPPI01000005
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
155160
155075
-
Leu
CAG
[ENA]
¡û
>W1711662062
MQTZ01000049
Cyanobacteriota
Leptolyngbya sp. 'hensonii' 'hensonii' [MQTZ]
15802
15717
-
Leu
CAG
[ENA]
¡û
>W1711666556
MRCB01000030
Cyanobacteriota
Hydrococcus rivularis NIES-593 [MRCB]
1726
1811
+
Leu
CAG
[ENA]
¡û
>C171000061
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
1156533
1156447
-
Leu
CAG
-
¡û
>C171000124
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
1156533
1156447
-
Leu
CAG
-
¡û
>C171064204
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
5714669
5714752
+
Leu
CAG
-
¡û
>W131036355
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
5472090
5472007
-
Leu
CAG
[ENA]
¡û
>W131058619
ANFQ01000228
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
8149
8066
-
Leu
CAG
[ENA]
¡û
>W131063291
ANKO01000146
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
17637
17554
-
Leu
CAG
[ENA]
¡û
>C025569
CP000393
Actinomycetota
Trichodesmium erythraeum [CP000393]
4846955
4846872
-
Leu
CAG
[Ensembl]
¡û
>w021623
AAVU01000009
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
38576
38490
-
Leu
CAG
[ENA]
¡û
>W141004295
AFXD01000027
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
149762
149847
+
Leu
CAG
[ENA]
¡û
>W141038436
ALVV02000006
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
29685
29772
+
Leu
CAG
[ENA]
¡û
>W141038540
ALVY01000154
Cyanobacteriota
Gloeocapsa sp. PCC 73106 [ALVY]
6975
7058
+
Leu
CAG
[ENA]
¡û
>W141067384
ASAK01000002
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
53265
53348
+
Leu
CAG
[ENA]
¡û
>W141091949
AUZM01000024
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
50361
50444
+
Leu
CAG
[ENA]
¡û
>W141096700
AVFS01000032
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
9397
9314
-
Leu
CAG
[ENA]
¡û
>W141096740
AVFT01000018
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
8107
8190
+
Leu
CAG
[ENA]
¡û
>W141096779
AVFU01000062
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
8110
8193
+
Leu
CAG
[ENA]
¡û
>W141096819
AVFV01000108
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
14472
14555
+
Leu
CAG
[ENA]
¡û
>W141096871
AVFW01000152
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
62892
62809
-
Leu
CAG
[ENA]
¡û
>W141096887
AVFX01000038
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
58090
58173
+
Leu
CAG
[ENA]
¡û
>W141096930
AVFY01000060
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
136550
136633
+
Leu
CAG
[ENA]
¡û
>W141096961
AVFZ01000105
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
62690
62607
-
Leu
CAG
[ENA]
¡û
>WENV181233571
OFET01000008
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
136591
136677
+
Leu
CAG
[ENA]
¢þ
>W141139163
AWNH01000078
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
25324
25407
+
Leu
CAG
[ENA]
¡û
>W08010879
ABRV01000026
Cyanobacteriota
Synechococcus sp. PCC 7335 [ABRV]
85587
85672
+
Leu
CAG
[ENA]
¡û
>W08011369
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
145226
145143
-
Leu
CAG
[ENA]
¡û
>W141240132
CAFN01000268
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
5088
5003
-
Leu
CAG
[ENA]
¡û
>ENV08000526
ABME01037242
Stromatolite metagenome; microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico
11
97
+
Leu
CAG
[ENA]
¡û
>WENV183747890
PPFU01001963
[PPFU] hypolithon metagenome; Antarctic Hypolithon
83
-1
-
Leu
CAG
[ENA]
¢þ
>WENV183748375
PPFU01033062
[PPFU] hypolithon metagenome; Antarctic Hypolithon
564
647
+
Leu
CAG
[ENA]
¢þ
>WENV170002262
AGSF01001915
[AGSF] microbial mat metagenome; purple microbial (photo and chemo synthetic) mats found in low oxygen high sulfur sink holes
394
477
+
Leu
CAG
[ENA]
¢þ
>WENV170984130
MWVV01176643
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
391
305
-
Leu
CAG
[ENA]
¢þ
>WENV170984311
MWVV01231791
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
144
227
+
Leu
CAG
[ENA]
¢þ
>WENV170991525
MWWA01223535
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
350
437
+
Leu
CAG
[ENA]
¢þ
>C181004830
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
5776287
5776373
+
Leu
CAG
-
¡û
>C181169656
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
996596
996681
+
Leu
CAG
-
¡û
>C191000795
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
2918723
2918806
+
Leu
CAG
-
¡û
>W09100657
AABK04000005
Cyanobacteriota
Trichodesmium erythraeum IMS101 [AABK]
36009
35926
-
Leu
CAG
[ENA]
¡û
>W09113163
ABYK01000018
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
2521
2606
+
Leu
CAG
[ENA]
¡û
>W1910175478
BJCD01000049
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
73783
73700
-
Leu
CAG
[ENA]
¡û
>W1910194154
CZCS01000181
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
27576
27659
+
Leu
CAG
[ENA]
¡û
>W1910194191
CZCT02000096
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
51142
51225
+
Leu
CAG
[ENA]
¡û
>W1910194241
CZCU01000138
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
27302
27219
-
Leu
CAG
[ENA]
¡û
>W1910194291
CZCZ01000006
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
433820
433737
-
Leu
CAG
[ENA]
¡û
>W1910194344
CZDF01000188
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
112554
112637
+
Leu
CAG
[ENA]
¡û
>W1910617509
LIRO01000017
Cyanobacteriota
Limnothrix sp. PR1529 [LIRO]
2428
2345
-
Leu
CAG
[ENA]
¡û
>W1910695509
MDVL01000819
Cyanobacteriota
Euhalothece sp. KZN 001 KZN 001 [MDVL]
9671
9754
+
Leu
CAG
[ENA]
¡û
>W1911204883
NRIU01002591
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
11822
11905
+
Leu
CAG
[ENA]
¡û
>W1911219923
NRTA01000006
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
105274
105360
+
Leu
CAG
[ENA]
¡û
>W1911638307
PVWJ01000107
Cyanobacteriota
Merismopedia glauca CCAP 1448/3 [PVWJ]
18271
18355
+
Leu
CAG
[ENA]
¡û
>SRA1000533
SRR001043.53372
Stromatolites, microbial fraction from Rios Mesquites microbiolite in Cuatro Cienagas, Mexico (SRP000135)
11
97
+
Leu
CAG
[SRA]
>W1810069165
PEBC01000006
Cyanobacteriota
Cyanobacterium aponinum B-1201 [PEBC]
55995
55910
-
Leu
CAG
[ENA]
¡û
>W1810185574
PKGD01000093
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
1320
1405
+
Leu
CAG
[ENA]
¡û
>W1810185577
PKGD01000172
Cyanobacteriota
Arthrospira sp. O9.13F [PKGD]
6596
6511
-
Leu
CAG
[ENA]
¡û
>W1810267643
PQWO01000010
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
106303
106386
+
Leu
CAG
[ENA]
¡û
>W1810366184
PVWD01000035
Cyanobacteriota
filamentous cyanobacterium CCP2 [PVWD]
23231
23314
+
Leu
CAG
[ENA]
¡û
>W1810366233
PVWE01000184
Cyanobacteriota
filamentous cyanobacterium CCP1 [PVWE]
577
660
+
Leu
CAG
[ENA]
¡û
>W1810366248
PVWG01000005
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
155122
155037
-
Leu
CAG
[ENA]
¡û
>W1810366415
PVWK01000117
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
38555
38638
+
Leu
CAG
[ENA]
¡û
>W10111336
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
42355
42440
+
Leu
CAG
[ENA]
¡û
>C11106712
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1189506
1189589
+
Leu
CAG
[Ensembl]
¡û
>C11106756
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1189506
1189589
+
Leu
CAG
[Ensembl]
¡û
>W11114279
ADDH01000062
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
42355
42440
+
Leu
CAG
[ENA]
¡û
>W11143177
AEPQ01000238
Cyanobacteriota
Moorena producens 3L [AEPQ]
143170
143087
-
Leu
CAG
[ENA]
¡û
>W1511564096
LADK01000405
Cyanobacteriota
Trichodesmium erythraeum 21-75 [LADK]
15924
16007
+
Leu
CAG
[ENA]
¡û
>W1511582914
LATL02000241
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
24604
24687
+
Leu
CAG
[ENA]
¡û
>W1511585672
LAYT01000224
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
52250
52335
+
Leu
CAG
[ENA]
¡û
>C161002695
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
2675432
2675346
-
Leu
CAG
[Ensembl]
¡û
>C161002775
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
3701547
3701632
+
Leu
CAG
[Ensembl]
¡û
>C161049401
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
4500361
4500276
-
Leu
CAG
-
¡û
>C161103159
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
4625169
4625084
-
Leu
CAG
-
¡û
>W121005263
AFSJ01000153
Unclassified
sea squirt metagenome P2-Fiji [AFSJ]
10397
10312
-
Leu
CAG
[ENA]
¡û
>W121005305
AFSK01000083
Unclassified
sea squirt metagenome P3-Solomon [AFSK]
1841
1926
+
Leu
CAG
[ENA]
¡û
>W121009995
AGGA01000398
Unclassified
sea squirt metagenome P4-Papua_New_Guinea [AGGA]
8715
8630
-
Leu
CAG
[ENA]
¡û
>W121016784
AGRF01000001
Unclassified
sea squirt metagenome P1-Palau [AGRF]
180806
180721
-
Leu
CAG
[ENA]
¡û
>W1610057114
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
5216349
5216434
+
Leu
CAG
[ENA]
¡û
>C131004342
CP003590
Cyanobacteriota
Pleurocapsa sp. PCC 7327 [CP003590]
2180813
2180898
+
Leu
CAG
[Ensembl]
¡û
>C131004411
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
1422883
1422800
-
Leu
CAG
[Ensembl]
¡û
>C131004885
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
6675226
6675143
-
Leu
CAG
[Ensembl]
¡û
>C131010427
CP003945
Cyanobacteriota
Halothece sp. PCC 7418 [CP003945]
1737805
1737722
-
Leu
CAG
[Ensembl]
¡û
>C131010514
CP003947
Cyanobacteriota
Cyanobacterium aponinum PCC 10605 [CP003947]
446702
446619
-
Leu
CAG
[Ensembl]
¡û
>C131004824
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
3994064
3993981
-
Leu
CAG
[Ensembl]
¡û
>W1610668873
LJZR01000001
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
136633
136719
+
Leu
CAG
[ENA]
¡û
>W1610992158
LWRO01000011
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
84108
84025
-
Leu
CAG
[ENA]
¡û
>W1611013566
LXYR01000011
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
34053
33967
-
Leu
CAG
[ENA]
¡û
>W1611066583
MBRF01000008
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
110034
109951
-
Leu
CAG
[ENA]
¡û
>W1710053813
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
5216349
5216434
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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