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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6005 (17 seq.)
>WENV180022344
FTFY01001154
[FTFY] metagenome; soil
16666
16573
-
Ser
GCT
[ENA]
¢þ
>W141258919
CBXX010000040
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
32970
32877
-
Ser
GCT
[ENA]
¡û
>WENV183739165
PJUE01002544
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1056
1149
+
Ser
GCT
[ENA]
¢þ
>W1911802807
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
2027490
2027397
-
Ser
GCT
[ENA]
¡û
>W1911802884
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
408961
409054
+
Ser
GCT
[ENA]
¡û
>W1810400001
PYFP01000001
Betaproteobacteria
Glaciimonas sp. PCH181 [PYFP]
1700128
1700035
-
Ser
GCT
[ENA]
¡û
>C151062597
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
2572894
2572987
+
Ser
GCT
[Ensembl]
¡û
>C151082388
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
2520147
2520054
-
Ser
GCT
-
¡û
>W1511683823
LFLT01000004
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
165255
165348
+
Ser
GCT
[ENA]
¡û
>W1511683873
LFLU01000004
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
146311
146404
+
Ser
GCT
[ENA]
¡û
>C161053617
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
3253622
3253529
-
Ser
GCT
[Ensembl]
¡û
>C161053711
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
3136614
3136521
-
Ser
GCT
[Ensembl]
¡û
>C161053785
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
2461086
2461179
+
Ser
GCT
[Ensembl]
¡û
>W121061953
AJHH01000098
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
18582
18675
+
Ser
GCT
[ENA]
¡û
>W121085186
AKJA01000145
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
9212
9305
+
Ser
GCT
[ENA]
¡û
>W121086364
AKJW01000013
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
9229
9322
+
Ser
GCT
[ENA]
¡û
>W1710557525
FOLC01000003
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
22869
22776
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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