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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60203 (37 seq.)
>W131052005
AMYG01000065
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
740
654
-
Leu
CAG
[ENA]
¡û
>W131167553
ARDJ01000009
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
4816
4902
+
Leu
CAG
[ENA]
¡û
>w018980
AATV01000029
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
22637
22549
-
Leu
CAG
[ENA]
¡û
>w010182
AAKQ01000005
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
72523
72435
-
Leu
CAG
[ENA]
¡û
>W141092610
AVAF01000122
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
115314
115400
+
Leu
CAG
[ENA]
¡û
>WENV181226123
OFDK01000062
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
48937
49023
+
Leu
CAG
[ENA]
¢þ
>C08010941
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
574973
575059
+
Leu
CAG
[Ensembl]
¡û
>C08011072
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
1717005
1716922
-
Leu
CAG
[Ensembl]
¡û
>W141276475
JADV01000007
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
60631
60717
+
Leu
CAG
[ENA]
¡û
>WENV170675663
LDZP01000190
[LDZP] terrestrial metagenome; oil reservoir sample I1
16659
16573
-
Leu
CAG
[ENA]
¢þ
>WENV170676484
LDZS01000031
[LDZS] terrestrial metagenome; oil reservoir sample K3
14086
14000
-
Leu
CAG
[ENA]
¢þ
>C191108107
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
1165467
1165553
+
Leu
CAG
-
¡û
>W09133538
ACPF01000036
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
21894
21808
-
Leu
CAG
[ENA]
¡û
>W09134121
ACQZ01000003
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
83137
83223
+
Leu
CAG
[ENA]
¡û
>W09135065
ACVH01000041
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
427
341
-
Leu
CAG
[ENA]
¡û
>W09135165
ACVK01000033
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
12026
12112
+
Leu
CAG
[ENA]
¡û
>W09135871
ACXP01000030
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
21892
21806
-
Leu
CAG
[ENA]
¡û
>C151045295
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
602639
602725
+
Leu
CAG
[Ensembl]
¡û
>W10105944
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
35710
35624
-
Leu
CAG
[ENA]
¡û
>W10120506
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
775
689
-
Leu
CAG
[ENA]
¡û
>C10113381
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
650388
650474
+
Leu
CAG
[Ensembl]
¡û
>C10113435
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
692412
692498
+
Leu
CAG
[Ensembl]
¡û
>W11108267
ACXY01000023
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
35710
35624
-
Leu
CAG
[ENA]
¡û
>W1511275122
JOOI01000003
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
261561
261647
+
Leu
CAG
[ENA]
¡û
>C11122499
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
1709218
1709132
-
Leu
CAG
[Ensembl]
¡û
>C11122701
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
614827
614913
+
Leu
CAG
[Ensembl]
¡û
>C11123232
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
737425
737511
+
Leu
CAG
[Ensembl]
¡û
>W11127115
ADXD01000058
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
775
689
-
Leu
CAG
[ENA]
¡û
>W11152679
AEYS01000018
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1292
1206
-
Leu
CAG
[ENA]
¡û
>W1610043659
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5572
5486
-
Leu
CAG
[ENA]
¡û
>W121068117
AJUD01000012
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
15055
15141
+
Leu
CAG
[ENA]
¡û
>W1610612295
LGEO01000027
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16659
16573
-
Leu
CAG
[ENA]
¡û
>W1710040819
BAZY01000019
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
5572
5486
-
Leu
CAG
[ENA]
¡û
>W1710515323
FNBS01000038
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
9759
9845
+
Leu
CAG
[ENA]
¡û
>W1710560400
FONI01000076
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
820
734
-
Leu
CAG
[ENA]
¡û
>W1710583283
FQUR01000007
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
255739
255825
+
Leu
CAG
[ENA]
¡û
>W1710733801
LGEO01000027
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
16659
16573
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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