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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60249 (72 seq.)
>W1710793516
LJPL01000003
Bacillota
Streptococcus pasteurianus [LJPL]
111630
111715
+
Leu
CAG
[ENA]
¡û
>W1710989045
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
621279
621364
+
Leu
CAG
[ENA]
¡û
>W1711006289
LQOF01000015
Bacillota
Streptococcus gallolyticus [LQOF]
9539
9624
+
Leu
CAG
[ENA]
¡û
>W1711019323
LQXV01000131
Bacillota
Streptococcus gallolyticus [LQXV]
44712
44797
+
Leu
CAG
[ENA]
¡û
>W1711207032
LXFC01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
284886
284971
+
Leu
CAG
[ENA]
¡û
>W1711305582
MAMV01000011
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
885513
885598
+
Leu
CAG
[ENA]
¡û
>C171084872
CP018822
Bacillota
Streptococcus gallolyticus subsp. gallolyticus DSM 16831 [CP018822]
2212675
2212760
+
Leu
CAG
-
¡û
>WENV180116390
OAQU01000218
[OAQU] human gut metagenome; ENVO:feces
3076
2991
-
Leu
CAG
[ENA]
¢þ
>WENV180116444
OAQV01000004
[OAQV] human gut metagenome; ENVO:feces
41455
41370
-
Leu
CAG
[ENA]
¢þ
>WENV180118829
OASD01001283
[OASD] human gut metagenome; ENVO:feces
4019
4104
+
Leu
CAG
[ENA]
¢þ
>WENV180198766
OBAD01008198
[OBAD] human gut metagenome; ENVO:feces
662
577
-
Leu
CAG
[ENA]
¢þ
>WENV180401593
OBRM01000185
[OBRM] human gut metagenome; ENVO:feces
3076
2991
-
Leu
CAG
[ENA]
¢þ
>WENV180401987
OBRN01027950
[OBRN] human gut metagenome; ENVO:feces
4
89
+
Leu
CAG
[ENA]
¢þ
>WENV180415606
OBVF01000021
[OBVF] human gut metagenome; faeces
57223
57138
-
Leu
CAG
[ENA]
¢þ
>WENV181338200
OFMF01000940
[OFMF] human gut metagenome; human gut
19095
19180
+
Leu
CAG
[ENA]
¢þ
>W08006837
ABJK02000019
Bacillota
Streptococcus infantarius subsp. infantarius ATCC BAA-102 [ABJK]
34528
34443
-
Leu
CAG
[ENA]
¡û
>WENV181438569
OGDJ01000528
[OGDJ] metagenome; Human gut stool
5749
5664
-
Leu
CAG
[ENA]
¢þ
>WENV181516287
OGGX01002658
[OGGX] metagenome; Human gut stool
362
277
-
Leu
CAG
[ENA]
¢þ
>WENV181527091
OGHK01000273
[OGHK] metagenome; Human gut stool
9757
9672
-
Leu
CAG
[ENA]
¢þ
>WENV181555196
OGIT01000098
[OGIT] metagenome; Human gut stool
7062
7147
+
Leu
CAG
[ENA]
¢þ
>WENV181561477
OGJD01004145
[OGJD] metagenome; Human gut stool
3467
3552
+
Leu
CAG
[ENA]
¢þ
>WENV181567796
OGJK01000001
[OGJK] metagenome; Human gut stool
430482
430567
+
Leu
CAG
[ENA]
¢þ
>WENV181577552
OGJX01002390
[OGJX] metagenome; Human gut stool
7070
7155
+
Leu
CAG
[ENA]
¢þ
>WENV181579160
OGJY01025031
[OGJY] metagenome; Human gut stool
651
736
+
Leu
CAG
[ENA]
¢þ
>WENV181580038
OGJZ01003540
[OGJZ] metagenome; Human gut stool
235
150
-
Leu
CAG
[ENA]
¢þ
>WENV181879246
OGXF01000052
[OGXF] human gut metagenome; faeces
45965
46050
+
Leu
CAG
[ENA]
¢þ
>WENV181887263
OGXL01002629
[OGXL] human gut metagenome; faeces
6106
6021
-
Leu
CAG
[ENA]
¢þ
>WENV181889684
OGXN01000795
[OGXN] human gut metagenome; faeces
15993
16078
+
Leu
CAG
[ENA]
¢þ
>WENV181909252
OGYB01035973
[OGYB] human gut metagenome; faeces
598
683
+
Leu
CAG
[ENA]
¢þ
>WENV181948600
OGZE01011388
[OGZE] human gut metagenome; faeces
663
748
+
Leu
CAG
[ENA]
¢þ
>WENV181987246
OHAM01038210
[OHAM] human gut metagenome; faeces
448
533
+
Leu
CAG
[ENA]
¢þ
>WENV181997957
OHAU01009996
[OHAU] human gut metagenome; faeces
3293
3208
-
Leu
CAG
[ENA]
¢þ
>WENV182164466
OHMN01000369
[OHMN] human gut metagenome; faeces
35015
34930
-
Leu
CAG
[ENA]
¢þ
>WENV182394663
OIEJ01000183
[OIEJ] human gut metagenome; human gut
35943
36028
+
Leu
CAG
[ENA]
¢þ
>W141261893
CCBC010000201
Bacillota
Streptococcus gallolyticus [CCBC]
5829
5744
-
Leu
CAG
[ENA]
¡û
>WENV182890279
OKSF01014019
[OKSF] human gut metagenome; faeces
536
621
+
Leu
CAG
[ENA]
¢þ
>WENV182951053
OKVT01001556
[OKVT] human gut metagenome; human gut
367
282
-
Leu
CAG
[ENA]
¢þ
>WENV182954016
OKVZ01008691
[OKVZ] human gut metagenome; human gut
167
252
+
Leu
CAG
[ENA]
¢þ
>WENV183602678
OODK01000081
[OODK] human gut metagenome; human gut
32250
32165
-
Leu
CAG
[ENA]
¢þ
>WENV183605766
OODN01000019
[OODN] human gut metagenome; human gut
58532
58447
-
Leu
CAG
[ENA]
¢þ
>C181211619
LS483409
Bacillota
Streptococcus gallolyticus NCTC13773 [LS483409]
2213356
2213441
+
Leu
CAG
-
¡û
>C181214998
LS483462
Bacillota
Streptococcus pasteurianus NCTC13784 [LS483462]
1976629
1976714
+
Leu
CAG
-
¡û
>W141727322
JNCV01000048
Bacillota
Streptococcus macedonicus [JNCV]
108478
108563
+
Leu
CAG
[ENA]
¡û
>W1910889495
NETH01000011
Bacillota
Streptococcus gallolyticus BI02 [NETH]
45814
45899
+
Leu
CAG
[ENA]
¡û
>W1810069557
PEBL01000007
Bacillota
Streptococcus macedonicus 211MA [PEBL]
289991
290076
+
Leu
CAG
[ENA]
¡û
>W1810069605
PEBM01000044
Bacillota
Streptococcus macedonicus 27MV [PEBM]
5084
4999
-
Leu
CAG
[ENA]
¡û
>W1810069640
PEBN01000012
Bacillota
Streptococcus macedonicus 19AS [PEBN]
8497
8412
-
Leu
CAG
[ENA]
¡û
>W1810188061
PKIB01000007
Bacillota
Streptococcus macedonicus UMB0733 [PKIB]
92030
92115
+
Leu
CAG
[ENA]
¡û
>W1810907644
QVHX01000005
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
110505
110590
+
Leu
CAG
[ENA]
¡û
>W10127596
AEEM01000019
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
191206
191291
+
Leu
CAG
[ENA]
¡û
>C10111595
FN597254
Bacillota
Streptococcus gallolyticus UCN34 [FN597254]
2082883
2082968
+
Leu
CAG
[Ensembl]
¡û
>C11120597
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
2044987
2045072
+
Leu
CAG
[Ensembl]
¡û
>C11121188
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
1895052
1895137
+
Leu
CAG
[Ensembl]
¡û
>W1511447389
JUYN01000021
Bacillota
Streptococcus pasteurianus 651_SPAS [JUYN]
93370
93285
-
Leu
CAG
[ENA]
¡û
>W11135084
AEEM01000019
Bacillota
Streptococcus gallolyticus subsp. gallolyticus TX20005 [AEEM]
191206
191291
+
Leu
CAG
[ENA]
¡û
>W1511530619
JYKU01000014
Bacillota
Streptococcus gallolyticus subsp. gallolyticus NTS 31106099 [JYKU]
215033
215118
+
Leu
CAG
[ENA]
¡û
>C121010357
CP003295
Bacillota
Streptococcus infantarius subsp. infantarius CJ18 [CP003295]
1739126
1739211
+
Leu
CAG
[Ensembl]
¡û
>C121017497
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
2014392
2014477
+
Leu
CAG
[Ensembl]
¡û
>C121018012
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
1846351
1846436
+
Leu
CAG
[Ensembl]
¡û
>C161059331
CP013688
Bacillota
Streptococcus gallolyticus ICDDRB-NRC-S1 [CP013688]
140949
140864
-
Leu
CAG
[Ensembl]
¡û
>W1610514158
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
1762574
1762659
+
Leu
CAG
[ENA]
¡û
>W1610843921
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
621279
621364
+
Leu
CAG
[ENA]
¡û
>W1610856939
LQOF01000015
Bacillota
Streptococcus gallolyticus [LQOF]
9539
9624
+
Leu
CAG
[ENA]
¡û
>W1610867611
LQXV01000131
Bacillota
Streptococcus gallolyticus [LQXV]
44712
44797
+
Leu
CAG
[ENA]
¡û
>W1610995062
LXFC01000003
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
284886
284971
+
Leu
CAG
[ENA]
¡û
>W1710520144
FNFJ01000003
Bacillota
Streptococcus gallolyticus [FNFJ]
90866
90781
-
Leu
CAG
[ENA]
¡û
>W1710521616
FNGN01000003
Bacillota
Streptococcus gallolyticus [FNGN]
91229
91144
-
Leu
CAG
[ENA]
¡û
>W1710538094
FNUH01000003
Bacillota
Streptococcus gallolyticus [FNUH]
58306
58221
-
Leu
CAG
[ENA]
¡û
>W1710545437
FOBM01000002
Bacillota
Streptococcus gallolyticus [FOBM]
468022
468107
+
Leu
CAG
[ENA]
¡û
>W1710551961
FOGM01000020
Bacillota
Streptococcus gallolyticus [FOGM]
17230
17145
-
Leu
CAG
[ENA]
¡û
>W1710558547
FOLZ01000002
Bacillota
Streptococcus gallolyticus [FOLZ]
578283
578368
+
Leu
CAG
[ENA]
¡û
>W1710578353
FPBN01000007
Bacillota
Streptococcus gallolyticus [FPBN]
429
344
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK