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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60261 (82 seq.)
>W1711352944
MDDP01000010
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
479536
479450
-
Leu
TAA
[ENA]
¡û
>C171036275
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
2289530
2289444
-
Leu
TAA
-
¡û
>w013991
AAOC01000001
Bacteroidota
Maribacter sp. HTCC2170 HTCC2170 [AAOC]
188145
188233
+
Leu
TAA
[ENA]
¡û
>WENV180114017
OAPR01107905
[OAPR] marine metagenome; seawater
94
178
+
Leu
TAA
[ENA]
¢þ
>WENV180210204
OBAL01151505
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
338
254
-
Leu
TAA
[ENA]
¢þ
>WENV180367447
OBOE01093729
[OBOE] marine metagenome; ENVO:00002010
326
410
+
Leu
TAA
[ENA]
¢þ
>WENV180376812
OBOM01100850
[OBOM] marine metagenome; Seawater
263
347
+
Leu
TAA
[ENA]
¢þ
>WENV180395643
OBPT01060630
[OBPT] marine metagenome; ENVO:00002010 seawater
222
138
-
Leu
TAA
[ENA]
¢þ
>WENV180396288
OBPU01100230
[OBPU] marine metagenome; ENVO:00002010
214
298
+
Leu
TAA
[ENA]
¢þ
>WENV180591329
OCOV01012246
[OCOV] marine metagenome; ENVO:01000301
552
636
+
Leu
TAA
[ENA]
¢þ
>WENV180593612
OCOX01104214
[OCOX] marine metagenome; ENVO:00002010
195
279
+
Leu
TAA
[ENA]
¢þ
>WENV180594164
OCOY01072304
[OCOY] marine metagenome; ENVO:00002010
258
174
-
Leu
TAA
[ENA]
¢þ
>WENV180650369
OCSY01012937
[OCSY] marine metagenome; 30 L Plastic container
88
4
-
Leu
TAA
[ENA]
¢þ
>W141067183
ARZX01000001
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
335327
335413
+
Leu
TAA
[ENA]
¡û
>W141079140
ATLG01000025
Bacteroidota
Cellulophaga baltica 4 [ATLG]
289129
289215
+
Leu
TAA
[ENA]
¡û
>W141079178
ATLH01000029
Bacteroidota
Cellulophaga baltica 13 [ATLH]
178206
178292
+
Leu
TAA
[ENA]
¡û
>W141079213
ATLI01000026
Bacteroidota
Cellulophaga baltica 18 [ATLI]
182736
182822
+
Leu
TAA
[ENA]
¡û
>W141079246
ATLJ01000034
Bacteroidota
Cellulophaga baltica NN016038 [ATLJ]
116863
116949
+
Leu
TAA
[ENA]
¡û
>W141093437
AVBI01000014
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
266111
266025
-
Leu
TAA
[ENA]
¡û
>W141094593
AVCS01000009
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
179613
179527
-
Leu
TAA
[ENA]
¡û
>W141096658
AVFO01000002
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
367335
367421
+
Leu
TAA
[ENA]
¡û
>WENV181126277
OEFV01034378
[OEFV] marine metagenome; Particulate matter on a 0.22 Um pore size filter
139
55
-
Leu
TAA
[ENA]
¢þ
>W08005604
ABIB01000001
Bacteroidota
Kordia algicida OT-1 [ABIB]
402129
402043
-
Leu
TAA
[ENA]
¡û
>WENV182581592
OJGX01016558
[OJGX] seawater metagenome; Sea water
1142
1058
-
Leu
TAA
[ENA]
¢þ
>WENV182586246
OJHK01000011
[OJHK] seawater metagenome; Sea water
223571
223657
+
Leu
TAA
[ENA]
¢þ
>WENV182591707
OJIO01002513
[OJIO] seawater metagenome; Sea water
4895
4811
-
Leu
TAA
[ENA]
¢þ
>WENV183704056
PDWI01000014
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
73654
73738
+
Leu
TAA
[ENA]
¢þ
>WENV183719153
PDWJ01010188
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2694
2778
+
Leu
TAA
[ENA]
¢þ
>WENV170023074
BCQK01119148
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
122
208
+
Leu
TAA
[ENA]
¢þ
>WENV170024202
BCQL01029938
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
471
557
+
Leu
TAA
[ENA]
¢þ
>WENV170130617
CENR01017374
[CENR] marine metagenome genome assembly TARA_018_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
445
359
-
Leu
TAA
[ENA]
¢þ
>WENV170290222
CERZ01027634
[CERZ] marine metagenome genome assembly TARA_082_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
291
205
-
Leu
TAA
[ENA]
¢þ
>C181067224
CP022515
Bacteroidota
Arenibacter algicola SMS7 [CP022515]
2836437
2836353
-
Leu
TAA
-
¡û
>C191127747
CP034570
Bacteroidota
Maribacter sp. MJ134 [CP034570]
2179692
2179776
+
Leu
TAA
-
¡û
>W141562340
JHZC01000002
Bacteroidota
Maribacter antarcticus DSM 21422 [JHZC]
48220
48134
-
Leu
TAA
[ENA]
¡û
>W09110743
ABVW01000002
Bacteroidota
Flavobacteria bacterium MS024-3C [ABVW]
4896
4812
-
Leu
TAA
[ENA]
¡û
>WENV024387
AACY020802575
Marine microbial communities from Global Ocean Sampling (GOS)
158
244
+
Leu
TAA
[ENA]
>W141807597
JPOO01000001
Bacteroidota
Arenibacter algicola [JPOO]
919443
919357
-
Leu
TAA
[ENA]
¡û
>W141819232
JQMD01000002
Bacteroidota
Zobellia uliginosa [JQMD]
4724523
4724439
-
Leu
TAA
[ENA]
¡û
>W1910545616
FZLT01000045
Bacteroidota
Cellulophaga lytica [FZLT]
31655
31571
-
Leu
TAA
[ENA]
¡û
>W1910693628
MDGN01000034
Bacteroidota
Maribacter sp. 4U21 [MDGN]
165368
165452
+
Leu
TAA
[ENA]
¡û
>W1810118446
PHQQ01000032
Bacteroidota
Arenibacter catalasegens P308H10 [PHQQ]
46167
46083
-
Leu
TAA
[ENA]
¡û
>W1810121568
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
240071
240155
+
Leu
TAA
[ENA]
¡û
>W1810144854
PIOB01000014
Bacteroidota
Arenibacter hampyeongensis JCM 17788 [PIOB]
35317
35401
+
Leu
TAA
[ENA]
¡û
>W1810596570
QGGQ01000002
Bacteroidota
Maribacter polysiphoniae DSM 23514 [QGGQ]
710960
711044
+
Leu
TAA
[ENA]
¡û
>W1810659323
QJJZ01000004
Bacteroidota
Arenibacter sp. ARW7G5Y1 [QJJZ]
77586
77502
-
Leu
TAA
[ENA]
¡û
>W1810693658
QLLN01000001
Bacteroidota
Arenibacter echinorum DSM 23522 [QLLN]
10567
10483
-
Leu
TAA
[ENA]
¡û
>W1810914355
QVON01000006
Bacteroidota
Arenibacter sp. P308M17 [QVON]
179122
179038
-
Leu
TAA
[ENA]
¡û
>C151046356
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
2121378
2121292
-
Leu
TAA
[Ensembl]
¡û
>C151061213
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
1841847
1841761
-
Leu
TAA
[Ensembl]
¡û
>C151062888
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
1862665
1862579
-
Leu
TAA
[Ensembl]
¡û
>C151098505
FP476056
Bacteroidota
Zobellia galactanivorans DsiJT [FP476056]
2887417
2887333
-
Leu
TAA
[Ensembl]
¡û
>C151098506
FP476056
Bacteroidota
Zobellia galactanivorans DsiJT [FP476056]
2869430
2869346
-
Leu
TAA
[Ensembl]
¡û
>SRA1048457
SRR035094.177041
454 Sequencing (SRP001815)
44
128
+
Leu
TAA
[SRA]
>SRA1051344
SRR035096.147525
454 Sequencing (SRP001817)
481
395
-
Leu
TAA
[SRA]
>C10106842
CP002157
Bacteroidota
Maribacter sp. HTCC2170 [CP002157]
890646
890730
+
Leu
TAA
[Ensembl]
¡û
>C11104730
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
2421602
2421516
-
Leu
TAA
[Ensembl]
¡û
>C11105687
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
2162982
2162896
-
Leu
TAA
[Ensembl]
¡û
>W1511320912
JQCT01000001
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
176647
176733
+
Leu
TAA
[ENA]
¡û
>W1511433246
JUHB01000001
Bacteroidota
Cellulophaga sp. Hel_I_12 [JUHB]
3295612
3295528
-
Leu
TAA
[ENA]
¡û
>W1511594909
LBMG01000002
Bacteroidota
Kordia jejudonensis SSK3-3 [LBMG]
87999
87913
-
Leu
TAA
[ENA]
¡û
>C161027991
CP010535
Bacteroidota
Sediminicola sp. YIK13 [CP010535]
3385661
3385575
-
Leu
TAA
[Ensembl]
¡û
>W1610082695
BDGL01000017
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
11536
11450
-
Leu
TAA
[ENA]
¡û
>W1610534972
JRLU01000001
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
265911
265825
-
Leu
TAA
[ENA]
¡û
>W1610535173
JRLZ01000004
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
332850
332936
+
Leu
TAA
[ENA]
¡û
>W1610626572
LICK01000010
Bacteroidota
Polaribacter sp. BACL8 MAG-120531-bin13 [LICK]
42541
42625
+
Leu
TAA
[ENA]
¡û
>W1610626596
LICL01000427
Bacteroidota
Polaribacter sp. BACL8 MAG-120619-bin41 [LICL]
88
172
+
Leu
TAA
[ENA]
¡û
>W1710081869
BDGL01000017
Bacteroidota
Arenibacter sp. NBRC 103722 C-21 [BDGL]
11536
11450
-
Leu
TAA
[ENA]
¡û
>W1710505763
FMTY01000001
Bacteroidota
Flavobacterium saliperosum [FMTY]
464450
464536
+
Leu
TAA
[ENA]
¡û
>W1710514672
FNBD01000001
Bacteroidota
Cellulophaga baltica [FNBD]
180484
180570
+
Leu
TAA
[ENA]
¡û
>W1710579955
FPIY01000002
Bacteroidota
Cellulophaga fucicola [FPIY]
557700
557786
+
Leu
TAA
[ENA]
¡û
>W1710583589
FQUX01000011
Bacteroidota
Arenibacter palladensis [FQUX]
2570
2486
-
Leu
TAA
[ENA]
¡û
>W1710587924
FQYX01000037
Bacteroidota
Arenibacter nanhaiticus [FQYX]
21289
21373
+
Leu
TAA
[ENA]
¡û
>W1710587926
FQYX01000037
Bacteroidota
Arenibacter nanhaiticus [FQYX]
21746
21830
+
Leu
TAA
[ENA]
¡û
>W1710588367
FQZH01000001
Bacteroidota
Flavobacterium haoranii [FQZH]
1483008
1483094
+
Leu
TAA
[ENA]
¡û
>W1710588368
FQZH01000001
Bacteroidota
Flavobacterium haoranii [FQZH]
1483151
1483237
+
Leu
TAA
[ENA]
¡û
>W1710606126
FWXO01000001
Bacteroidota
Cellulophaga tyrosinoxydans [FWXO]
280936
281022
+
Leu
TAA
[ENA]
¡û
>W1710608026
FXAO01000001
Bacteroidota
Arenibacter troitsensis [FXAO]
278533
278449
-
Leu
TAA
[ENA]
¡û
>W1710637208
JRLU01000001
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
265911
265825
-
Leu
TAA
[ENA]
¡û
>W1710637409
JRLZ01000004
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
332850
332936
+
Leu
TAA
[ENA]
¡û
>W1710757699
LICK01000010
Bacteroidota
Polaribacter sp. BACL8 MAG-120531-bin13 [LICK]
42541
42625
+
Leu
TAA
[ENA]
¡û
>W1710757723
LICL01000427
Bacteroidota
Polaribacter sp. BACL8 MAG-120619-bin41 [LICL]
88
172
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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