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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60319 (74 seq.)
>W1710816458
LKLC01000033
Bacillota
Lactococcus lactis subsp. lactis [LKLC]
377
462
+
Leu
TAA
[ENA]
¡û
>W1710816566
LKLE01000031
Bacillota
Lactococcus lactis subsp. lactis [LKLE]
198737
198652
-
Leu
TAA
[ENA]
¡û
>W1710816701
LKLG01000040
Bacillota
Lactococcus lactis subsp. lactis [LKLG]
799
884
+
Leu
TAA
[ENA]
¡û
>W1710817091
LKLO01000049
Bacillota
Lactococcus lactis subsp. lactis [LKLO]
102087
102002
-
Leu
TAA
[ENA]
¡û
>W1710817321
LKLS01000135
Bacillota
Lactococcus lactis subsp. lactis [LKLS]
449
534
+
Leu
TAA
[ENA]
¡û
>W1710817371
LKLT01000101
Bacillota
Lactococcus lactis subsp. lactis [LKLT]
269
186
-
Leu
TAA
[ENA]
¡û
>W1710817472
LKLV01000090
Bacillota
Lactococcus lactis subsp. lactis [LKLV]
2588
2671
+
Leu
TAA
[ENA]
¡û
>W1710817628
LKLY01000079
Bacillota
Lactococcus lactis subsp. lactis [LKLY]
87944
88029
+
Leu
TAA
[ENA]
¡û
>W1710818342
LKPE01000014
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
4501
4586
+
Leu
TAA
[ENA]
¡û
>W131187959
ASAE01000210
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [ASAE]
2988
2903
-
Leu
TAA
[ENA]
¡û
>W131252347
CBLU010000006
Bacillota
Lactococcus lactis subsp. lactis A12 [CBLU]
340448
340363
-
Leu
TAA
[ENA]
¡û
>W1711738647
MUBH01000037
Bacillota
Lactococcus lactis subsp. lactis [MUBH]
331
246
-
Leu
TAA
[ENA]
¡û
>C171042346
CP015895
Bacillota
Lactococcus lactis subsp. lactis 184 [CP015895]
2036484
2036399
-
Leu
TAA
-
¡û
>C171042403
CP015896
Bacillota
Lactococcus lactis [CP015896]
2100484
2100399
-
Leu
TAA
-
¡û
>C171042522
CP015898
Bacillota
Lactococcus lactis subsp. lactis C10 [CP015898]
1771940
1771857
-
Leu
TAA
-
¡û
>C171042951
CP015905
Bacillota
Lactococcus lactis subsp. lactis UC063 [CP015905]
1685317
1685232
-
Leu
TAA
-
¡û
>C171043008
CP015906
Bacillota
Lactococcus lactis subsp. lactis UC77 [CP015906]
2168906
2168821
-
Leu
TAA
-
¡û
>C171043136
CP015908
Bacillota
Lactococcus lactis subsp. lactis UL8 [CP015908]
1769893
1769810
-
Leu
TAA
-
¡û
>C171128669
LT599049
Bacillota
Lactococcus lactis subsp. lactis A12 [LT599049]
2034348
2034263
-
Leu
TAA
-
¡û
>C012020
AE005176
Bacillota
Lactococcus lactis subsp. lactis Il1403 IL1403 [AE005176]
2012621
2012538
-
Leu
TAA
[Ensembl]
¡û
>WENV180182433
OAWO01030647
[OAWO] human gut metagenome; faeces
156
71
-
Leu
TAA
[ENA]
¢þ
>WENV180192719
OAXJ01063863
[OAXJ] human gut metagenome; faeces
73
158
+
Leu
TAA
[ENA]
¢þ
>WENV180502976
OCAM01001026
[OCAM] human gut metagenome; faeces
1897
1982
+
Leu
TAA
[ENA]
¢þ
>W141075848
ATBD01000107
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis str. TIFN4 [ATBD]
515
430
-
Leu
TAA
[ENA]
¡û
>W141075967
ATBF01000086
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis str. TIFN2 [ATBF]
651
566
-
Leu
TAA
[ENA]
¡û
>W141105955
AVPC01001927
Bacillota
Enterococcus gallinarum EGD-AAK12 [AVPC]
153
236
+
Leu
TAA
[ENA]
¡û
>WENV181581792
OGKA01074590
[OGKA] metagenome; Human gut stool
261
346
+
Leu
TAA
[ENA]
¢þ
>W141171170
AXZK01000115
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis str. LD61 [AXZK]
324
239
-
Leu
TAA
[ENA]
¡û
>WENV181816412
OGTL01002846
[OGTL] human gut metagenome; faeces
9550
9467
-
Leu
TAA
[ENA]
¢þ
>W141228413
BALX01000030
Bacillota
Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933 [BALX]
10697
10612
-
Leu
TAA
[ENA]
¡û
>WENV183407556
OMAC01001014
[OMAC] human gut metagenome; feces
8270
8185
-
Leu
TAA
[ENA]
¢þ
>WENV183427962
OMBN01001423
[OMBN] human gut metagenome; feces
7943
7860
-
Leu
TAA
[ENA]
¢þ
>WENV183428960
OMBO01000771
[OMBO] human gut metagenome; feces
16244
16159
-
Leu
TAA
[ENA]
¢þ
>WENV183470331
OMEJ01023986
[OMEJ] human gut metagenome; feces
211
126
-
Leu
TAA
[ENA]
¢þ
>WENV183473241
OMER01001779
[OMER] human gut metagenome; feces
7040
6955
-
Leu
TAA
[ENA]
¢þ
>WENV183511927
OMJG01014833
[OMJG] food metagenome; Cotija cheese
864
949
+
Leu
TAA
[ENA]
¢þ
>PHG0100055
AF323672
Siphoviridae
Lactococcus phage bIL311 URLIE 9 (AF323672)
13135
13220
+
Leu
TAA
[ENA]
¡û
>C191108598
CP033607
Bacillota
Lactococcus lactis IL1403 [CP033607]
2012694
2012609
-
Leu
TAA
-
¡û
>W1910583470
JXKB01000005
Bacillota
Lactococcus lactis subsp. lactis ATCC 19435 [JXKB]
144023
143938
-
Leu
TAA
[ENA]
¡û
>W1910804827
MTJP01000010
Bacillota
Lactococcus lactis 21 [MTJP]
16478
16393
-
Leu
TAA
[ENA]
¡û
>W1911503424
OESF01000065
Bacillota
Lactococcus lactis [OESF]
4458
4543
+
Leu
TAA
[ENA]
¡û
>W1911503523
OESH01000080
Bacillota
Lactococcus lactis [OESH]
3457
3542
+
Leu
TAA
[ENA]
¡û
>W1911503577
OESI01000072
Bacillota
Lactococcus lactis [OESI]
4469
4554
+
Leu
TAA
[ENA]
¡û
>W1911503688
OESK01000217
Bacillota
Lactococcus lactis [OESK]
61
146
+
Leu
TAA
[ENA]
¡û
>W1911532027
OGTW01000012
Bacillota
Lactococcus lactis [OGTW]
12062
12147
+
Leu
TAA
[ENA]
¡û
>W1911532076
OGTW02000012
Bacillota
Lactococcus lactis [OGTW]
12062
12147
+
Leu
TAA
[ENA]
¡û
>W1911534463
OLMC01000038
Bacillota
Lactococcus lactis subsp. lactis CF112 [OLMC]
4462
4547
+
Leu
TAA
[ENA]
¡û
>W1911534529
OLME01000019
Bacillota
Lactococcus lactis subsp. lactis CF111 [OLME]
4444
4529
+
Leu
TAA
[ENA]
¡û
>W1911631358
PUFC01000067
Bacillota
Lactococcus lactis subsp. lactis ATCC 19435 [PUFC]
155354
155269
-
Leu
TAA
[ENA]
¡û
>W1810270753
PREW01000001
Bacillota
Lactococcus lactis PAZ [PREW]
110969
111054
+
Leu
TAA
[ENA]
¡û
>C151042521
CP009054
Bacillota
Lactococcus lactis subsp. lactis NCDO 2118 [CP009054]
2069274
2069189
-
Leu
TAA
[Ensembl]
¡û
>C151063796
CP010050
Bacillota
Lactococcus lactis subsp. lactis S0 [CP010050]
1903725
1903640
-
Leu
TAA
[Ensembl]
¡û
>W1510016517
BBSI01000034
Bacillota
Lactococcus lactis subsp. lactis JCM 5805 [BBSI]
10988
10903
-
Leu
TAA
[ENA]
¡û
>C10108561
CP001834
Bacillota
Lactococcus lactis subsp. lactis KF147 [CP001834]
2061384
2061299
-
Leu
TAA
[Ensembl]
¡û
>W1511349129
JRKY01000043
Bacillota
Lactococcus lactis subsp. lactis CECT 4433 [JRKY]
33143
33060
-
Leu
TAA
[ENA]
¡û
>W1511584245
LAVD01000086
Bacillota
Lactococcus lactis subsp. lactis DPC6853 [LAVD]
14788
14703
-
Leu
TAA
[ENA]
¡û
>W1610062330
BCNL01000008
Bacillota
Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933 [BCNL]
130834
130919
+
Leu
TAA
[ENA]
¡û
>W1610529975
JQCM01000013
Bacillota
Lactococcus lactis subsp. lactis [JQCM]
53420
53335
-
Leu
TAA
[ENA]
¡û
>W1610586036
LDEK01000007
Bacillota
Lactococcus lactis [LDEK]
215736
215651
-
Leu
TAA
[ENA]
¡û
>W1610638071
LIWD01000179
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LIWD]
25273
25188
-
Leu
TAA
[ENA]
¡û
>W1610680446
LKLC01000033
Bacillota
Lactococcus lactis subsp. lactis [LKLC]
377
462
+
Leu
TAA
[ENA]
¡û
>W1610680554
LKLE01000031
Bacillota
Lactococcus lactis subsp. lactis [LKLE]
198737
198652
-
Leu
TAA
[ENA]
¡û
>W1610680689
LKLG01000040
Bacillota
Lactococcus lactis subsp. lactis [LKLG]
799
884
+
Leu
TAA
[ENA]
¡û
>W1610681079
LKLO01000049
Bacillota
Lactococcus lactis subsp. lactis [LKLO]
102087
102002
-
Leu
TAA
[ENA]
¡û
>W1610681309
LKLS01000135
Bacillota
Lactococcus lactis subsp. lactis [LKLS]
449
534
+
Leu
TAA
[ENA]
¡û
>W1610681359
LKLT01000101
Bacillota
Lactococcus lactis subsp. lactis [LKLT]
269
186
-
Leu
TAA
[ENA]
¡û
>W1610681460
LKLV01000090
Bacillota
Lactococcus lactis subsp. lactis [LKLV]
2588
2671
+
Leu
TAA
[ENA]
¡û
>W1610681616
LKLY01000079
Bacillota
Lactococcus lactis subsp. lactis [LKLY]
87944
88029
+
Leu
TAA
[ENA]
¡û
>W1610682749
LKPE01000014
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LKPE]
4501
4586
+
Leu
TAA
[ENA]
¡û
>W1710059871
BCNL01000008
Bacillota
Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933 [BCNL]
130834
130919
+
Leu
TAA
[ENA]
¡û
>W1710504835
FMTF01000021
Bacillota
Lactococcus lactis [FMTF]
10987
10902
-
Leu
TAA
[ENA]
¡û
>W1710631565
JQCM01000013
Bacillota
Lactococcus lactis subsp. lactis [JQCM]
53420
53335
-
Leu
TAA
[ENA]
¡û
>W1710705316
LDEK01000007
Bacillota
Lactococcus lactis [LDEK]
215736
215651
-
Leu
TAA
[ENA]
¡û
>W1710773746
LIWD01000179
Bacillota
Lactococcus lactis subsp. lactis bv. diacetylactis [LIWD]
25273
25188
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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