This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60367 (21 seq.)
>W1710797218
LJSW01000006
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
132206
132120
-
Leu
CAG
[ENA]
¡û
>W1710857350
LMAF01000002
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
634981
634895
-
Leu
CAG
[ENA]
¡û
>W1711261680
LYWY01000037
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
353201
353287
+
Leu
CAG
[ENA]
¡û
>C171056103
CP017057
Alphaproteobacteria
Erythrobacter litoralis DSM 8509 [CP017057]
403300
403386
+
Leu
CAG
-
¡û
>C009129
CP000157
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [CP000157]
2937552
2937638
+
Leu
CAG
[Ensembl]
¡û
>w012923
AAMW01000002
Alphaproteobacteria
Erythrobacter sp. NAP1 [AAMW]
294394
294306
-
Leu
CAG
[ENA]
¡û
>WENV181233931
OFET01000360
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
19805
19891
+
Leu
CAG
[ENA]
¢þ
>WENV181234539
OFEU01000309
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
19805
19891
+
Leu
CAG
[ENA]
¢þ
>WENV183747859
PPFU01001018
[PPFU] hypolithon metagenome; Antarctic Hypolithon
20246
20160
-
Leu
CAG
[ENA]
¢þ
>WENV170136341
CENV01024590
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19542
19456
-
Leu
CAG
[ENA]
¢þ
>C181054547
CP021912
Alphaproteobacteria
Erythrobacter sp. KY5 [CP021912]
156054
155968
-
Leu
CAG
-
¡û
>C191002608
AP018498
Alphaproteobacteria
Altererythrobacter sp. B11 [AP018498]
220167
220081
-
Leu
CAG
-
¡û
>W09101643
AAGG01000001
Alphaproteobacteria
Erythrobacter litoralis HTCC2594 [AAGG]
114848
114762
-
Leu
CAG
[ENA]
¡û
>W141700200
JMIX01000014
Alphaproteobacteria
Erythrobacter litoralis [JMIX]
90165
90251
+
Leu
CAG
[ENA]
¡û
>W1911767898
QXFK01000011
Alphaproteobacteria
Pelagerythrobacter aerophilus Ery1 [QXFK]
112877
112963
+
Leu
CAG
[ENA]
¡û
>W1810195703
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
5876
5790
-
Leu
CAG
[ENA]
¡û
>C151082927
CP011452
Alphaproteobacteria
Croceibacterium atlanticum 26DY36 [CP011452]
1977353
1977267
-
Leu
CAG
-
¡û
>C161092426
CP015963
Alphaproteobacteria
Altererythrobacter ishigakiensis NBRC 107699 [CP015963]
2543011
2542925
-
Leu
CAG
-
¡û
>W1610661175
LJSW01000006
Alphaproteobacteria
Erythrobacteraceae bacterium HL-111 [LJSW]
132206
132120
-
Leu
CAG
[ENA]
¡û
>W1610719731
LMAF01000002
Alphaproteobacteria
Erythrobacter sp. YT30 [LMAF]
634981
634895
-
Leu
CAG
[ENA]
¡û
>W1611023655
LYWY01000037
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
353201
353287
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK