This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60483 (75 seq.)
>W1710857532
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
147181
147267
+
Tyr
GTA
[ENA]
¡û
>W1710877927
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
160089
160175
+
Pseudo
GTA
[ENA]
¡û
>W1711132219
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
297853
297767
-
Tyr
GTA
[ENA]
¡û
>W1711314226
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
316423
316509
+
Tyr
GTA
[ENA]
¡û
>C171083733
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
738418
738504
+
Tyr
GTA
-
¡û
>W131237002
AUMT01000008
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
108660
108574
-
Tyr
GTA
[ENA]
¡û
>W141168449
AXUZ01000016
Bacteroidota
Chryseobacterium sp. UNC8MFCol [AXUZ]
123812
123898
+
Pseudo
GTA
[ENA]
¡û
>WENV181731524
OGQD01001224
[OGQD] human gut metagenome; faeces
2376
2462
+
Tyr
GTA
[ENA]
¢þ
>W141233126
BAVL01000013
Bacteroidota
Chryseobacterium indologenes NBRC 14944 [BAVL]
143617
143703
+
Pseudo
GTA
[ENA]
¡û
>W141261518
CCAV010000004
Bacteroidota
Chryseobacterium oranimense G311 [CCAV]
290339
290253
-
Pseudo
GTA
[ENA]
¡û
>WENV170011960
APMI01106552
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
566
480
-
Tyr
GTA
[ENA]
¢þ
>W09126995
ACKQ01000055
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
20995
20909
-
Tyr
GTA
[ENA]
¡û
>C181056673
CP022058
Bacteroidota
Chryseobacterium indologenes FDAARGOS_337 [CP022058]
4919838
4919922
+
Tyr
GTA
-
¡û
>C181092423
CP023968
Bacteroidota
Chryseobacterium indologenes FDAARGOS_379 [CP023968]
148203
148287
+
Tyr
GTA
-
¡û
>C191099969
CP033070
Bacteroidota
Chryseobacterium sp. 3008163 [CP033070]
1429621
1429537
-
Tyr
GTA
-
¡û
>C191111348
CP033760
Bacteroidota
Chryseobacterium indologenes FDAARGOS_537 [CP033760]
247156
247072
-
Tyr
GTA
-
¡û
>C191112931
CP033828
Bacteroidota
Chryseobacterium indologenes FDAARGOS_510 [CP033828]
3772836
3772752
-
Tyr
GTA
-
¡û
>C191115334
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
2381090
2381174
+
Tyr
GTA
-
¡û
>C191115694
CP033922
Bacteroidota
Chryseobacterium sp. G0162 [CP033922]
1598941
1598856
-
Tyr
GTA
-
¡û
>C191115736
CP033923
Bacteroidota
Chryseobacterium nakagawai G0041 [CP033923]
3992385
3992470
+
Tyr
GTA
-
¡û
>C191115993
CP033926
Bacteroidota
Chryseobacterium joostei DSM 16927 [CP033926]
4052360
4052446
+
Tyr
GTA
-
¡û
>C191116214
CP033930
Bacteroidota
Chryseobacterium indologenes H5559 [CP033930]
4297690
4297774
+
Tyr
GTA
-
¡û
>C191116301
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4048509
4048593
+
Tyr
GTA
-
¡û
>C191204266
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4388991
4389077
+
Tyr
GTA
-
¡û
>C191209961
LR134386
Bacteroidota
Chryseobacterium nakagawai NCTC13529 [LR134386]
1079083
1079168
+
Tyr
GTA
-
¡û
>C191218933
LR215967
Bacteroidota
Chryseobacterium indologenes 3012STDY6981895 [LR215967]
4038557
4038641
+
Tyr
GTA
-
¡û
>W141809579
JPRP01000001
Bacteroidota
Chryseobacterium formosense [JPRP]
1055261
1055347
+
Tyr
GTA
[ENA]
¡û
>W141815902
JQJM01000007
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
134136
134222
+
Tyr
GTA
[ENA]
¡û
>W1910184833
BJTC01000006
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
208881
208795
-
Tyr
GTA
[ENA]
¡û
>W1910341163
FTPE01000008
Bacteroidota
Chryseobacterium sp. JV274 [FTPE]
151111
151197
+
Tyr
GTA
[ENA]
¡û
>W1911218413
NRQS01000007
Bacteroidota
Chryseobacterium sp. CH1 [NRQS]
153438
153522
+
Tyr
GTA
[ENA]
¡û
>W1911218499
NRQT01000014
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
1450
1534
+
Tyr
GTA
[ENA]
¡û
>W1911566411
PCOU01000029
Bacteroidota
Chryseobacterium sp. MYb7 [PCOU]
58269
58355
+
Tyr
GTA
[ENA]
¡û
>W1911567081
PCPH01000007
Bacteroidota
Chryseobacterium culicis MYb44 [PCPH]
86578
86493
-
Tyr
GTA
[ENA]
¡û
>W1911567440
PCPP01000001
Bacteroidota
Chryseobacterium culicis MYb25 [PCPP]
134003
134088
+
Tyr
GTA
[ENA]
¡û
>W1911647535
QAJO01000002
Bacteroidota
Chryseobacterium sp. KBW03 [QAJO]
279292
279207
-
Tyr
GTA
[ENA]
¡û
>W1911680448
QICI01000103
Bacteroidota
Chryseobacterium sp. CH21 [QICI]
10698
10784
+
Tyr
GTA
[ENA]
¡û
>W1911680516
QICX01000016
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
18855
18941
+
Tyr
GTA
[ENA]
¡û
>W1911701255
QNUF01000008
Bacteroidota
Chryseobacterium rhizosphaerae KCTC 22548 [QNUF]
16588
16504
-
Tyr
GTA
[ENA]
¡û
>W1911701810
QNVT01000017
Bacteroidota
Chryseobacterium pennae 1_F178 [QNVT]
86305
86217
-
Tyr
GTA
[ENA]
¡û
>W1810193877
PKNN01000008
Bacteroidota
Chryseobacterium scophthalmum VV8 [PKNN]
26107
26193
+
Tyr
GTA
[ENA]
¡û
>W1810234236
PPEG02000006
Bacteroidota
Chryseobacterium viscerum 687B-08 [PPEG]
272325
272240
-
Tyr
GTA
[ENA]
¡û
>W1810234402
PPEI02000005
Bacteroidota
Chryseobacterium oncorhynchi 701B-08 [PPEI]
269755
269669
-
Tyr
GTA
[ENA]
¡û
>W1810385689
PXUE01000004
Bacteroidota
Chryseobacterium aurantiacum F30 [PXUE]
264487
264401
-
Tyr
GTA
[ENA]
¡û
>W1810538604
QDFZ01000009
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
30800
30714
-
Tyr
GTA
[ENA]
¡û
>W1810609221
QGTV01000007
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
116200
116114
-
Tyr
GTA
[ENA]
¡û
>W1511432051
JUGG01000008
Bacteroidota
Chryseobacterium sp. YR460 [JUGG]
191166
191252
+
Tyr
GTA
[ENA]
¡û
>W1511432217
JUGI01000020
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
114437
114523
+
Tyr
GTA
[ENA]
¡û
>W1511432540
JUGO01000013
Bacteroidota
Chryseobacterium sp. YR485 [JUGO]
123235
123321
+
Tyr
GTA
[ENA]
¡û
>W1511432597
JUGP01000008
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
157337
157251
-
Tyr
GTA
[ENA]
¡û
>W1511432769
JUGT01000011
Bacteroidota
Chryseobacterium sp. YR561 [JUGT]
543109
543023
-
Tyr
GTA
[ENA]
¡û
>W1511432937
JUGW01000009
Bacteroidota
Chryseobacterium sp. CF356 [JUGW]
10386
10472
+
Tyr
GTA
[ENA]
¡û
>W1511433337
JUHD01000011
Bacteroidota
Chryseobacterium sp. OV705 [JUHD]
156011
155925
-
Tyr
GTA
[ENA]
¡û
>W1511587141
LAZY01000022
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
53235
53319
+
Tyr
GTA
[ENA]
¡û
>W1511699514
LGIP01000019
Bacteroidota
Chryseobacterium sp. Hurlbut01 [LGIP]
461056
460970
-
Tyr
GTA
[ENA]
¡û
>C161084474
CP015199
Bacteroidota
Chryseobacterium glaciei IHBB 10212 [CP015199]
1076353
1076267
-
Pseudo
GTA
[Ensembl]
¡û
>W1610205669
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
15561
15475
-
Pseudo
GTA
[ENA]
¡û
>W1610436669
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
301702
301616
-
Tyr
GTA
[ENA]
¡û
>W1610719913
LMAI01000010
Bacteroidota
Chryseobacterium aquaticum greenlandense [LMAI]
147181
147267
+
Tyr
GTA
[ENA]
¡û
>W1610740273
LMQN01000012
Bacteroidota
Chryseobacterium sp. Leaf405 [LMQN]
160089
160175
+
Pseudo
GTA
[ENA]
¡û
>W1610943292
LUVZ01000043
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
297853
297767
-
Tyr
GTA
[ENA]
¡û
>W1611059101
MAUH01000001
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
316423
316509
+
Tyr
GTA
[ENA]
¡û
>W1750017858
FUZE01000002
Bacteroidota
Chryseobacterium balustinum [FUZE]
389788
389704
-
Tyr
GTA
[ENA]
¡û
>W1710207170
FCNN01000197
Bacteroidota
Chryseobacterium indologenes [FCNN]
15561
15475
-
Pseudo
GTA
[ENA]
¡û
>W1710436405
FJVD01000005
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
301702
301616
-
Tyr
GTA
[ENA]
¡û
>W1710522378
FNHD01000006
Bacteroidota
Chryseobacterium taihuense [FNHD]
46831
46917
+
Tyr
GTA
[ENA]
¡û
>W1710540328
FNWQ01000005
Bacteroidota
Chryseobacterium culicis [FNWQ]
274089
274003
-
Tyr
GTA
[ENA]
¡û
>W1710554879
FOIU01000005
Bacteroidota
Chryseobacterium wanjuense [FOIU]
104365
104279
-
Pseudo
GTA
[ENA]
¡û
>W1710565782
FORL01000008
Bacteroidota
Chryseobacterium indologenes [FORL]
110318
110232
-
Pseudo
GTA
[ENA]
¡û
>W1710577113
FPAP01000002
Bacteroidota
Chryseobacterium formosense [FPAP]
821743
821829
+
Tyr
GTA
[ENA]
¡û
>W1710582262
FPKW01000014
Bacteroidota
Chryseobacterium limigenitum [FPKW]
16069
16155
+
Tyr
GTA
[ENA]
¡û
>W1710583400
FQUT01000005
Bacteroidota
Chryseobacterium arachidis [FQUT]
197536
197622
+
Tyr
GTA
[ENA]
¡û
>W1710595000
FSRQ01000004
Bacteroidota
Chryseobacterium scophthalmum [FSRQ]
26799
26885
+
Tyr
GTA
[ENA]
¡û
>W1710596691
FTMT01000015
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
18694
18780
+
Tyr
GTA
[ENA]
¡û
>W1710606051
FWXM01000005
Bacteroidota
Chryseobacterium sp. YR221 [FWXM]
277764
277678
-
Pseudo
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK