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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60484 (100 seq.)
>W1710926751
LOEL01000012
Bacteroidota
Porphyromonas gingivalis [LOEL]
45036
44952
-
Leu
CAA
[ENA]
¡û
>W131111425
APMB01000053
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
6264
6348
+
Leu
CAA
[ENA]
¡û
>W131175801
ARJN01000051
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
34868
34784
-
Leu
CAA
[ENA]
¡û
>W1712084854
NHRU01000001
Bacteroidota
Porphyromonas gingivalis [NHRU]
361968
362052
+
Leu
CAA
[ENA]
¡û
>C016393
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
703822
703739
-
Leu
CAA
[Ensembl]
¡û
>WENV180003998
FLRQ01003381
[FLRQ] metagenome; saliva
230
314
+
Leu
CAA
[ENA]
¢þ
>WENV180006022
FLRX01093603
[FLRX] metagenome; saliva
296
212
-
Leu
CAA
[ENA]
¢þ
>WENV180006635
FLRY01164730
[FLRY] metagenome; saliva
87
3
-
Leu
CAA
[ENA]
¢þ
>WENV180007347
FLSA01003148
[FLSA] metagenome; saliva
124
40
-
Leu
CAA
[ENA]
¢þ
>WENV180010670
FLSD01047050
[FLSD] metagenome; saliva
118
202
+
Leu
CAA
[ENA]
¢þ
>WENV180011084
FLSI01134495
[FLSI] metagenome; saliva
87
3
-
Leu
CAA
[ENA]
¢þ
>WENV180012104
FLSK01188073
[FLSK] metagenome; saliva
26
110
+
Leu
CAA
[ENA]
¢þ
>WENV180731754
ODGW01010792
[ODGW] human metagenome; G_DNA_Supragingival plaque
778
862
+
Leu
CAA
[ENA]
¢þ
>W141074427
ASYL01000049
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
109
25
-
Leu
CAA
[ENA]
¡û
>W141145641
AWUU01000107
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
9316
9232
-
Leu
CAA
[ENA]
¡û
>W141145675
AWUV01000088
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
6366
6450
+
Leu
CAA
[ENA]
¡û
>W141145737
AWUW01000143
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
9498
9414
-
Leu
CAA
[ENA]
¡û
>W141145967
AWVC01000124
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
9434
9350
-
Leu
CAA
[ENA]
¡û
>W141145999
AWVD01000095
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
12854
12938
+
Leu
CAA
[ENA]
¡û
>W141146036
AWVE01000059
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
9344
9260
-
Leu
CAA
[ENA]
¡û
>WENV182004553
OHBE01000135
[OHBE] human gut metagenome; faeces
73054
73138
+
Leu
CAA
[ENA]
¢þ
>C08007310
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
750737
750653
-
Leu
CAA
[Ensembl]
¡û
>WENV183507890
OMGZ01000020
[OMGZ] human oral metagenome; human oral
2525
2609
+
Leu
CAA
[ENA]
¢þ
>WENV183507983
OMHA01000214
[OMHA] human oral metagenome; human oral
2603
2519
-
Leu
CAA
[ENA]
¢þ
>WENV183510897
OMHT01000118
[OMHT] human oral metagenome; human oral
2308
2392
+
Leu
CAA
[ENA]
¢þ
>WENV183705658
PDWI01002039
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
31149
31065
-
Leu
CAA
[ENA]
¢þ
>WENV183706176
PDWI01003349
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8111
8195
+
Leu
CAA
[ENA]
¢þ
>WENV183706517
PDWI01004529
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
15
101
+
Leu
CAA
[ENA]
¢þ
>WENV183707807
PDWI01010774
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10156
10072
-
Leu
CAA
[ENA]
¢þ
>WENV183711293
PDWI01065287
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
607
523
-
Leu
CAA
[ENA]
¢þ
>WENV183712192
PDWI01091668
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
96
12
-
Leu
CAA
[ENA]
¢þ
>WENV183712344
PDWI01096783
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12
96
+
Leu
CAA
[ENA]
¢þ
>WENV183714259
PDWI01175617
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4
88
+
Leu
CAA
[ENA]
¢þ
>WENV183715545
PDWI01245957
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1
85
+
Leu
CAA
[ENA]
¢þ
>C181102092
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
2190050
2189966
-
Leu
CAA
-
¡û
>C181102156
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
773776
773692
-
Leu
CAA
-
¡û
>C181102165
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
405023
405107
+
Leu
CAA
-
¡û
>C181102227
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
1804505
1804589
+
Leu
CAA
-
¡û
>C181102303
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
607823
607739
-
Leu
CAA
-
¡û
>C181102310
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
240237
240321
+
Leu
CAA
-
¡û
>C181102357
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
102153
102237
+
Leu
CAA
-
¡û
>C181102441
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
1809467
1809383
-
Leu
CAA
-
¡û
>C181102457
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
243382
243466
+
Leu
CAA
-
¡û
>C181102544
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
1035819
1035735
-
Leu
CAA
-
¡û
>C181102559
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
819886
819970
+
Leu
CAA
-
¡û
>C181123614
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
751792
751708
-
Leu
CAA
-
¡û
>C181123669
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
442921
442837
-
Leu
CAA
-
¡û
>C181123718
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
703822
703738
-
Leu
CAA
-
¡û
>W1910371040
FUFB01000070
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
63271
63355
+
Leu
CAA
[ENA]
¡û
>W1910371059
FUFC01000014
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
39481
39565
+
Leu
CAA
[ENA]
¡û
>W1910371097
FUFD01000024
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
22606
22522
-
Leu
CAA
[ENA]
¡û
>W1910371160
FUFE01000077
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
9580
9496
-
Leu
CAA
[ENA]
¡û
>W1910371211
FUFF01000019
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
168290
168374
+
Leu
CAA
[ENA]
¡û
>W1910371237
FUFG01000031
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
56989
57073
+
Leu
CAA
[ENA]
¡û
>W1910371269
FUFH01000028
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
1315
1231
-
Leu
CAA
[ENA]
¡û
>W1910371318
FUFI01000014
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
47839
47923
+
Leu
CAA
[ENA]
¡û
>W1910371378
FUFJ01000061
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
78986
78902
-
Leu
CAA
[ENA]
¡û
>W1910372572
FUGF01000049
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
100446
100530
+
Leu
CAA
[ENA]
¡û
>W1910372609
FUGG01000023
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
9379
9295
-
Leu
CAA
[ENA]
¡û
>W1911247358
NSLL01000002
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
49785
49701
-
Leu
CAA
[ENA]
¡û
>W1911247406
NSLM01000003
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
42139
42223
+
Leu
CAA
[ENA]
¡û
>W1911247440
NSLN01000001
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
75842
75758
-
Leu
CAA
[ENA]
¡û
>W1911247493
NSLO01000005
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
100663
100747
+
Leu
CAA
[ENA]
¡û
>W1911247541
NSLP01000010
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
11556
11472
-
Leu
CAA
[ENA]
¡û
>W1911247590
NSLQ01000013
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
10050
9966
-
Leu
CAA
[ENA]
¡û
>W1911247629
NSLR01000011
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
9833
9749
-
Leu
CAA
[ENA]
¡û
>W1911247695
NSLS01000033
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
9762
9678
-
Leu
CAA
[ENA]
¡û
>W1911247711
NSLT01000004
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
57193
57109
-
Leu
CAA
[ENA]
¡û
>W1911247745
NSLU01000008
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
26346
26430
+
Leu
CAA
[ENA]
¡û
>W1911247789
NSLV01000002
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
50737
50653
-
Leu
CAA
[ENA]
¡û
>W1911247850
NSLW01000007
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
11953
11869
-
Leu
CAA
[ENA]
¡û
>W1911247872
NSLX01000001
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
88365
88281
-
Leu
CAA
[ENA]
¡û
>W1911709113
QPGS01000007
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
53407
53491
+
Leu
CAA
[ENA]
¡û
>W1810573712
QEKY01000003
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
66311
66398
+
Leu
CAA
[ENA]
¡û
>C151089038
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
1460168
1460252
+
Leu
CAA
-
¡û
>C151089086
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
1398791
1398875
+
Leu
CAA
-
¡û
>C11117319
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
1843324
1843240
-
Leu
CAA
[Ensembl]
¡û
>W1511328350
JQJE01000014
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
123326
123410
+
Leu
CAA
[ENA]
¡û
>W1511336132
JQZY01000015
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
47068
47152
+
Leu
CAA
[ENA]
¡û
>W1511336365
JRAE01000063
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
94721
94637
-
Leu
CAA
[ENA]
¡û
>W1511336397
JRAF01000021
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
34250
34334
+
Leu
CAA
[ENA]
¡û
>W1511336448
JRAG01000018
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
38211
38127
-
Leu
CAA
[ENA]
¡û
>W1511336550
JRAI01000063
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
46975
47059
+
Leu
CAA
[ENA]
¡û
>W1511336585
JRAJ01000010
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
22212
22128
-
Leu
CAA
[ENA]
¡û
>W1511336674
JRAL01000026
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
16089
16005
-
Leu
CAA
[ENA]
¡û
>W1511336757
JRAO01000030
Bacteroidota
Porphyromonas sp. COT-239 OH1446 [JRAO]
85280
85194
-
Leu
CAA
[ENA]
¡û
>W1511336847
JRAQ01000035
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
114095
114179
+
Leu
CAA
[ENA]
¡û
>W1511336930
JRAT01000009
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
37993
37909
-
Leu
CAA
[ENA]
¡û
>W1511343932
JRFD01000029
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
38027
37943
-
Leu
CAA
[ENA]
¡û
>C161018142
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
1987517
1987601
+
Leu
CAA
[Ensembl]
¡û
>C161046955
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
750505
750421
-
Leu
CAA
-
¡û
>C161051774
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
1409985
1410069
+
Leu
CAA
-
¡û
>W121073543
AJZS01000015
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
96972
97056
+
Leu
CAA
[ENA]
¡û
>W1610060554
BCBV01000105
Bacteroidota
Porphyromonas gingivalis [BCBV]
9376
9292
-
Leu
CAA
[ENA]
¡û
>W1610784244
LOEL01000012
Bacteroidota
Porphyromonas gingivalis [LOEL]
45036
44952
-
Leu
CAA
[ENA]
¡û
>W1710017881
ASYM01000061
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
9405
9321
-
Leu
CAA
[ENA]
¡û
>W1710017943
ASYN01000163
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
6056
5972
-
Leu
CAA
[ENA]
¡û
>W1710017991
ASYO01000126
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
9333
9249
-
Leu
CAA
[ENA]
¡û
>W1710018027
ASYP01000116
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
9304
9220
-
Leu
CAA
[ENA]
¡û
>W1710057809
BCBV01000105
Bacteroidota
Porphyromonas gingivalis [BCBV]
9376
9292
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK