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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.607415 (8 seq.)
>WENV182549002
OJBX01005573
[OJBX] seawater metagenome; Sea water
1483
1408
-
Phe
GAA
[ENA]
¢þ
>WENV182553841
OJCR01039172
[OJCR] seawater metagenome; Sea water
82
7
-
Phe
GAA
[ENA]
¢þ
>WENV182555237
OJCY01018296
[OJCY] seawater metagenome; Sea water
238
313
+
Phe
GAA
[ENA]
¢þ
>WENV182558263
OJDL01027204
[OJDL] seawater metagenome; Sea water
163
238
+
Phe
GAA
[ENA]
¢þ
>WENV182572302
OJFL01002888
[OJFL] seawater metagenome; Sea water
2366
2441
+
Phe
GAA
[ENA]
¢þ
>WENV182573575
OJFP01004518
[OJFP] seawater metagenome; Sea water
1325
1400
+
Phe
GAA
[ENA]
¢þ
>WENV182580758
OJGW01011533
[OJGW] seawater metagenome; Sea water
170
245
+
Phe
GAA
[ENA]
¢þ
>WENV182586650
OJHK01002492
[OJHK] seawater metagenome; Sea water
1759
1684
-
Phe
GAA
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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