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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60748 (29 seq.)
>A171001132
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
2550055
2550139
+
Ser
CGA
-
¡û
>A171003048
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
1986198
1986283
+
Ser
CGA
-
¡û
>A171003187
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1137930
1137845
-
Ser
CGA
-
¡û
>A171004141
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
1743531
1743616
+
Ser
CGA
-
¡û
>A171006958
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1407725
1407810
+
Ser
CGA
-
¡û
>WENV170681245
LFFM01000279
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
15262
15177
-
Ser
CGA
[ENA]
¢þ
>WENV170702169
LKMJ01000763
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
11021
11106
+
Ser
CGA
[ENA]
¢þ
>W1910226899
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
887959
888043
+
Ser
CGA
[ENA]
¡û
>W1910229320
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
365293
365377
+
Ser
CGA
[ENA]
¡û
>W1910229794
FOFD01000001
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
769350
769265
-
Ser
CGA
[ENA]
¡û
>W1910230835
FOZS01000001
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
1152560
1152476
-
Ser
CGA
[ENA]
¡û
>W1910340509
FTNP01000003
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
350613
350698
+
Ser
CGA
[ENA]
¡û
>W1910572713
JNCS01000003
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
17549
17464
-
Ser
CGA
[ENA]
¡û
>W1910826092
MWPH01000002
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
204254
204339
+
Ser
CGA
[ENA]
¡û
>W1911433977
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2154449
2154534
+
Ser
CGA
[ENA]
¡û
>W1911572229
PDBS01000001
Euryarchaeota
Natrinema sp. CBA1119 [PDBS]
3382215
3382131
-
Ser
CGA
[ENA]
¡û
>W1911709978
QPND01000006
Euryarchaeota
Saliphagus sp. LR7 [QPND]
61778
61693
-
Ser
CGA
[ENA]
¡û
>W1610004157
AGIN01000019
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
57124
57039
-
Ser
CGA
[ENA]
¡û
>W1610005377
AJVG01000010
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
28717
28632
-
Ser
CGA
[ENA]
¡û
>W1610011917
AOHW01000036
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
181383
181467
+
Ser
CGA
[ENA]
¡û
>W1610011972
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
9393
9477
+
Ser
CGA
[ENA]
¡û
>W1610012230
AOID01000051
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
86105
86189
+
Ser
CGA
[ENA]
¡û
>W1610012292
AOII01000034
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
45810
45895
+
Ser
CGA
[ENA]
¡û
>W1610012329
AOIJ01000033
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
78071
77986
-
Ser
CGA
[ENA]
¡û
>W1610012390
AOIK01000026
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
106295
106380
+
Ser
CGA
[ENA]
¡û
>W1610012697
AOIR01000059
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
261304
261388
+
Ser
CGA
[ENA]
¡û
>W1610012735
AOIS01000037
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
136412
136328
-
Ser
CGA
[ENA]
¡û
>W1610019032
ARPH01000006
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
272291
272375
+
Ser
CGA
[ENA]
¡û
>W1610046861
BBCV01000037
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
35647
35732
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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