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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60756 (71 seq.)
>W1711118030
LUDT01000004
Bacteroidota
Riemerella anatipestifer [LUDT]
7640
7727
+
Ser
TGA
[ENA]
¡û
>W1711715362
MTFE01000010
Bacteroidota
Cnuella takakiae [MTFE]
2875375
2875464
+
Ser
TGA
[ENA]
¡û
>W131170836
ARFT01000028
Bacteroidota
Riemerella columbina DSM 16469 [ARFT]
5262
5175
-
Ser
TGA
[ENA]
¡û
>W141007846
AGYB01000032
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
37520
37607
+
Ser
TGA
[ENA]
¡û
>WENV180727650
ODGU01008989
[ODGU] human metagenome; G_DNA_Supragingival plaque
3770
3855
+
Ser
TGA
[ENA]
¢þ
>WENV180731676
ODGW01006127
[ODGW] human metagenome; G_DNA_Supragingival plaque
659
574
-
Ser
TGA
[ENA]
¢þ
>WENV180749812
ODHS01000033
[ODHS] human metagenome; G_DNA_Supragingival plaque
76507
76422
-
Ser
TGA
[ENA]
¢þ
>WENV180787755
ODIS01013881
[ODIS] human metagenome; G_DNA_Supragingival plaque
591
506
-
Ser
TGA
[ENA]
¢þ
>WENV180795651
ODJB01000105
[ODJB] human metagenome; G_DNA_Supragingival plaque
64606
64521
-
Ser
TGA
[ENA]
¢þ
>WENV180809269
ODJK01008996
[ODJK] human metagenome; G_DNA_Subgingival plaque
2150
2235
+
Ser
TGA
[ENA]
¢þ
>WENV180845212
ODKT01000014
[ODKT] human metagenome; G_DNA_Supragingival plaque
49796
49881
+
Ser
TGA
[ENA]
¢þ
>WENV180925136
ODTK01043806
[ODTK] human metagenome; G_DNA_Supragingival plaque
516
431
-
Ser
TGA
[ENA]
¢þ
>WENV180938110
ODTX01000654
[ODTX] human metagenome; G_DNA_Supragingival plaque
9763
9848
+
Ser
TGA
[ENA]
¢þ
>WENV180938456
ODTX01002143
[ODTX] human metagenome; G_DNA_Supragingival plaque
9127
9042
-
Ser
TGA
[ENA]
¢þ
>WENV180943367
ODUC01000302
[ODUC] human metagenome; G_DNA_Supragingival plaque
27892
27807
-
Ser
TGA
[ENA]
¢þ
>WENV180943639
ODUC01001329
[ODUC] human metagenome; G_DNA_Supragingival plaque
9035
9120
+
Ser
TGA
[ENA]
¢þ
>WENV180951522
ODUH01029351
[ODUH] human metagenome; G_DNA_Subgingival plaque
590
675
+
Ser
TGA
[ENA]
¢þ
>WENV180980643
ODVE01000898
[ODVE] human metagenome; G_DNA_Supragingival plaque
10397
10482
+
Ser
TGA
[ENA]
¢þ
>WENV180999678
ODVT01047102
[ODVT] human metagenome; G_DNA_Buccal mucosa
795
710
-
Ser
TGA
[ENA]
¢þ
>WENV181007508
ODWE01000157
[ODWE] human metagenome; G_DNA_Supragingival plaque
569
484
-
Ser
TGA
[ENA]
¢þ
>WENV181063382
ODYP01000609
[ODYP] human metagenome; G_DNA_Supragingival plaque
22445
22530
+
Ser
TGA
[ENA]
¢þ
>WENV181075496
OEAP01000012
[OEAP] human metagenome; G_DNA_Supragingival plaque
45017
45102
+
Ser
TGA
[ENA]
¢þ
>WENV181079147
OEAS01002433
[OEAS] human metagenome; G_DNA_Supragingival plaque
9782
9867
+
Ser
TGA
[ENA]
¢þ
>WENV181083541
OEAV01010731
[OEAV] human metagenome; G_DNA_Supragingival plaque
2131
2216
+
Ser
TGA
[ENA]
¢þ
>WENV181145736
OEHQ01000037
[OEHQ] human metagenome; G_DNA_Supragingival plaque
78162
78077
-
Ser
TGA
[ENA]
¢þ
>WENV181178534
OEJT01000047
[OEJT] human metagenome; G_DNA_Supragingival plaque
45017
45102
+
Ser
TGA
[ENA]
¢þ
>WENV181182457
OEJV01010702
[OEJV] human metagenome; G_DNA_Supragingival plaque
891
806
-
Ser
TGA
[ENA]
¢þ
>WENV181368493
OFQL01011131
[OFQL] freshwater metagenome; Freshwater Lake
184
96
-
Ser
TGA
[ENA]
¢þ
>WENV181369577
OFQP01008996
[OFQP] freshwater metagenome; Freshwater Lake
457
369
-
Ser
TGA
[ENA]
¢þ
>WENV181401972
OFTY01000004
[OFTY] sludge metagenome; sludge
141392
141307
-
Ser
TGA
[ENA]
¢þ
>WENV181402031
OFTY01000046
[OFTY] sludge metagenome; sludge
93226
93141
-
Ser
TGA
[ENA]
¢þ
>WENV183092342
OLKZ01000210
[OLKZ] soil metagenome; soil
1157
1072
-
Ser
TGA
[ENA]
¢þ
>WENV183706343
PDWI01003843
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10980
11065
+
Ser
TGA
[ENA]
¢þ
>WENV183708173
PDWI01013544
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
8659
8574
-
Ser
TGA
[ENA]
¢þ
>WENV183708630
PDWI01018238
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1017
932
-
Ser
TGA
[ENA]
¢þ
>WENV183710432
PDWI01046534
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1622
1537
-
Ser
TGA
[ENA]
¢þ
>WENV183710885
PDWI01055450
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3133
3218
+
Ser
TGA
[ENA]
¢þ
>WENV183713774
PDWI01152779
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1503
1588
+
Ser
TGA
[ENA]
¢þ
>WENV183714533
PDWI01189402
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1166
1081
-
Ser
TGA
[ENA]
¢þ
>WENV170606273
FUWD010639595
[FUWD] metagenome; unknown
43
128
+
Ser
TGA
[ENA]
¢þ
>C181001918
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
2972980
2973065
+
Ser
TGA
-
¡û
>C181001949
AP017422
Bacteroidota
Filimonas lacunae NBRC 104114 [AP017422]
2970966
2970881
-
Ser
TGA
-
¡û
>C191181544
CP040694
Bacteroidota
Elizabethkingia sp. JS20170427COW [CP040694]
1712278
1712363
+
Ser
TGA
-
¡û
>W1911647258
QAJI01000005
Bacteroidota
Taibaiella sp. KBW10 [QAJI]
157352
157265
-
Ser
TGA
[ENA]
¡û
>W1810351403
PVEQ01000003
Bacteroidota
Sediminibacterium magnilacihabitans DSM 22423 [PVEQ]
105200
105115
-
Ser
TGA
[ENA]
¡û
>W1810577684
QEOK01000009
Bacteroidota
Filimonas sp. YR581 [QEOK]
259028
258943
-
Ser
TGA
[ENA]
¡û
>W1810858491
QTJU01000006
Bacteroidota
Deminuibacter soli K23C18032701 [QTJU]
246607
246692
+
Ser
TGA
[ENA]
¡û
>C151066970
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
3395268
3395183
-
Ser
TGA
[Ensembl]
¡û
>C151066972
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
2678940
2678855
-
Ser
TGA
[Ensembl]
¡û
>C151067038
CP010327
Bacteroidota
Myroides sp. A21 [CP010327]
153134
153047
-
Ser
TGA
[Ensembl]
¡û
>W10110911
ADCM01000002
Bacteroidota
Bacteroidetes oral taxon 274 taxon 274 str. F0058 [ADCM]
6197
6284
+
Ser
TGA
[ENA]
¡û
>W11113412
ADCM01000002
Bacteroidota
Bacteroidetes oral taxon 274 taxon 274 str. F0058 [ADCM]
6197
6284
+
Ser
TGA
[ENA]
¡û
>W1511300720
JPHF01000006
Bacteroidota
Flavihumibacter sp. ZG627 [JPHF]
101764
101679
-
Ser
TGA
[ENA]
¡û
>W1511336695
JRAN01000010
Bacteroidota
Porphyromonadaceae bacterium COT-184 OH4590 [JRAN]
5004
5091
+
Ser
TGA
[ENA]
¡û
>W1511387766
JSVC01000009
Bacteroidota
Flavihumibacter solisilvae 3·î3Æü [JSVC]
153803
153890
+
Ser
TGA
[ENA]
¡û
>W121009099
AGEC01000011
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
14761
14676
-
Ser
TGA
[ENA]
¡û
>W121009117
AGEC01000018
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
31321
31406
+
Ser
TGA
[ENA]
¡û
>W121009118
AGEC01000020
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
35790
35877
+
Ser
TGA
[ENA]
¡û
>W121009133
AGEC01000027
Bacteroidota
Myroides odoratimimus CCUG 10230 [AGEC]
100356
100443
+
Ser
TGA
[ENA]
¡û
>W121124120
BAEX01000037
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
3423
3338
-
Ser
TGA
[ENA]
¡û
>W121124123
BAEX01000056
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
2571
2656
+
Ser
TGA
[ENA]
¡û
>W121124132
BAEX01000076
Bacteroidota
Myroides injenensis M09-0166 [BAEX]
8870
8955
+
Ser
TGA
[ENA]
¡û
>W1610929389
LUDT01000004
Bacteroidota
Riemerella anatipestifer [LUDT]
7640
7727
+
Ser
TGA
[ENA]
¡û
>W1710528874
FNNO01000013
Bacteroidota
Hydrobacter penzbergensis [FNNO]
176
91
-
Ser
TGA
[ENA]
¡û
>W1710583125
FQUO01000002
Bacteroidota
Cnuella takakiae [FQUO]
280505
280416
-
Ser
TGA
[ENA]
¡û
>W1710591208
FRBO01000004
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
84126
84211
+
Ser
TGA
[ENA]
¡û
>W1710591212
FRBO01000005
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
168142
168229
+
Ser
TGA
[ENA]
¡û
>W1710591237
FRBO01000010
Bacteroidota
Myroides odoratimimus xuanwuensis [FRBO]
16581
16666
+
Ser
TGA
[ENA]
¡û
>W1710599381
FTOR01000007
Bacteroidota
Filimonas lacunae [FTOR]
98201
98286
+
Ser
TGA
[ENA]
¡û
>W1710599383
FTOR01000007
Bacteroidota
Filimonas lacunae [FTOR]
96187
96102
-
Ser
TGA
[ENA]
¡û
>W1710600250
FUWH01000002
Bacteroidota
Sediminibacterium ginsengisoli [FUWH]
425199
425284
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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