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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6092 (95 seq.)
>W1710785711
LJIC01000041
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
826
733
-
Ser
GCT
[ENA]
¡û
>W1711129941
LUUM01000090
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
6964
6871
-
Ser
GCT
[ENA]
¡û
>W1711228838
LXWX01000035
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
135886
135793
-
Ser
GCT
[ENA]
¡û
>W1711505823
MKVW01000003
Alphaproteobacteria
Rhizobiales bacterium 62-17 [MKVW]
150386
150293
-
Ser
GCT
[ENA]
¡û
>W1711783537
MVOD01000020
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
632793
632886
+
Ser
GCT
[ENA]
¡û
>W131163825
ARAB01000008
Alphaproteobacteria
Methylosinus sp. LW4 [ARAB]
974657
974750
+
Ser
GCT
[ENA]
¡û
>W131186325
ARWA01000001
Alphaproteobacteria
Methyloferula stellata AR4 [ARWA]
2087958
2087865
-
Ser
GCT
[ENA]
¡û
>W131218802
ATYA01000002
Alphaproteobacteria
Methylocapsa acidiphila B2 [ATYA]
518302
518209
-
Ser
GCT
[ENA]
¡û
>C004050
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
4931548
4931641
+
Ser
GCT
[Ensembl]
¡û
>C004110
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
4682932
4682839
-
Ser
GCT
[Ensembl]
¡û
>C018845
CP000463
Alphaproteobacteria
Rhodopseudomonas palustris [CP000463]
3012925
3013018
+
Ser
GCT
[Ensembl]
¡û
>C018895
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
3147536
3147629
+
Ser
GCT
[Ensembl]
¡û
>C018963
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
2689902
2689809
-
Ser
GCT
[Ensembl]
¡û
>C019015
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
2744972
2744879
-
Ser
GCT
[Ensembl]
¡û
>C019046
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
3462484
3462577
+
Ser
GCT
[Ensembl]
¡û
>WENV180292748
OBIV01604476
[OBIV] soil metagenome; Clay
145
52
-
Ser
GCT
[ENA]
¢þ
>WENV180309077
OBJR01503633
[OBJR] soil metagenome; soil
50
143
+
Ser
GCT
[ENA]
¢þ
>WENV180692975
OCZS010898404
[OCZS] soil metagenome; soil
94
187
+
Ser
GCT
[ENA]
¢þ
>WENV181145608
OEHO01359089
[OEHO] metagenome; unknown
97
190
+
Ser
GCT
[ENA]
¢þ
>W141149777
AWZU01000053
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
50411
50318
-
Ser
GCT
[ENA]
¡û
>W141150358
AXAI01000004
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
358364
358457
+
Ser
GCT
[ENA]
¡û
>W08008868
ABLP01000032
Alphaproteobacteria
Methylocella silvestris BL2 [ABLP]
18778
18688
-
Ser
GCT
[ENA]
¡û
>W141194133
AYSU01000008
Alphaproteobacteria
Rhodopseudomonas palustris JSC-3b [AYSU]
28440
28533
+
Ser
GCT
[ENA]
¡û
>W141214003
AZSJ01000007
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
906155
906062
-
Ser
GCT
[ENA]
¡û
>W141216049
AZUO01000001
Alphaproteobacteria
Methylosinus sp. LW3 [AZUO]
1820130
1820037
-
Ser
GCT
[ENA]
¡û
>W141223336
BADD01000767
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
4124
4031
-
Ser
GCT
[ENA]
¡û
>WENV182409058
OIFG01000911
[OIFG] human gut metagenome; stool
642
735
+
Ser
GCT
[ENA]
¢þ
>W141240067
CAFK01000011
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
180
87
-
Ser
GCT
[ENA]
¡û
>WENV182954968
OKWB01000547
[OKWB] human gut metagenome; stool
560
653
+
Ser
GCT
[ENA]
¢þ
>C08001586
CP001016
Alphaproteobacteria
Beijerinckia indica subsp. indica ATCC 9039 [CP001016]
2137115
2137208
+
Ser
GCT
[Ensembl]
¡û
>WENV182962989
OKWP01000063
[OKWP] human gut metagenome; stool
88848
88941
+
Ser
GCT
[ENA]
¢þ
>WENV182966368
OKWV01002030
[OKWV] human gut metagenome; stool
1005
912
-
Ser
GCT
[ENA]
¢þ
>WENV170002373
AGTN01011325
[AGTN] bioreactor metagenome; poplar biomass
103
10
-
Ser
GCT
[ENA]
¢þ
>WENV170553138
CXWK01008817
[CXWK] wastewater metagenome; activated sludge
3317
3224
-
Ser
GCT
[ENA]
¢þ
>WENV170648804
JRHI01002441
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
11209
11302
+
Ser
GCT
[ENA]
¢þ
>WENV170715112
LNFM01134378
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
986
893
-
Ser
GCT
[ENA]
¢þ
>C181041928
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
2674076
2673983
-
Ser
GCT
-
¡û
>C181089615
CP023737
Alphaproteobacteria
Methylosinus trichosporium OB3b [CP023737]
537247
537340
+
Ser
GCT
-
¡û
>C191028861
CP024846
Alphaproteobacteria
Beijerinckiaceae bacterium MG08 [CP024846]
2228411
2228504
+
Ser
GCT
-
¡û
>C191029935
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
2101568
2101475
-
Ser
GCT
-
¡û
>W09103847
AAKZ01000018
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
21920
21827
-
Ser
GCT
[ENA]
¡û
>W09103884
AALA01000016
Alphaproteobacteria
Rhodopseudomonas palustris BisA53 [AALA]
3448
3355
-
Ser
GCT
[ENA]
¡û
>W09104111
AALJ01000003
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
544265
544358
+
Ser
GCT
[ENA]
¡û
>W09104380
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
86086
85993
-
Ser
GCT
[ENA]
¡û
>W09104407
AALR01000002
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
135097
135004
-
Ser
GCT
[ENA]
¡û
>W09107585
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
910118
910025
-
Ser
GCT
[ENA]
¡û
>C191152085
CP036515
Alphaproteobacteria
Lichenihabitans psoromatis PAMC 29148 [CP036515]
3504464
3504557
+
Ser
GCT
-
¡û
>C191220364
LR536450
Alphaproteobacteria
Methylocella tundrae [LR536450]
267058
266965
-
Ser
GCT
-
¡û
>C191221059
LR590083
Alphaproteobacteria
Beijerinckiaceae bacterium RH AL1 [LR590083]
1186259
1186352
+
Ser
GCT
-
¡û
>W141701421
JMKQ01000006
Alphaproteobacteria
Methylocystis sp. LW5 [JMKQ]
137225
137132
-
Ser
GCT
[ENA]
¡û
>W141730487
JNIJ01000037
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
19378
19471
+
Ser
GCT
[ENA]
¡û
>W141815719
JQJH01000014
Alphaproteobacteria
Beijerinckia mobilis [JQJH]
742
649
-
Ser
GCT
[ENA]
¡û
>W141817281
JQKO01000008
Alphaproteobacteria
Methylocapsa aurea [JQKO]
153612
153519
-
Ser
GCT
[ENA]
¡û
>W141821199
JQNK01000002
Alphaproteobacteria
Methylosinus sp. PW1 [JQNK]
158151
158058
-
Ser
GCT
[ENA]
¡û
>W1910568887
JHAA01000002
Alphaproteobacteria
Rhodopseudomonas palustris PSBS [JHAA]
359963
359870
-
Ser
GCT
[ENA]
¡û
>C09107893
CP001280
Alphaproteobacteria
Methylocella silvestris BL2 [CP001280]
812878
812971
+
Ser
GCT
[Ensembl]
¡û
>W1910914008
NHSJ01000074
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
39337
39244
-
Ser
GCT
[ENA]
¡û
>W1911148313
NPET01000007
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
36196
36289
+
Ser
GCT
[ENA]
¡û
>W1911219114
NRRJ01000017
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
36353
36446
+
Ser
GCT
[ENA]
¡û
>W1911219159
NRSI01000013
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
70981
71074
+
Ser
GCT
[ENA]
¡û
>W1911653508
QDFX01000003
Alphaproteobacteria
Rhizobiaceae bacterium CPCC 101076 [QDFX]
12050
11957
-
Ser
GCT
[ENA]
¡û
>W1911760592
QWVU01000093
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
1100
1193
+
Ser
GCT
[ENA]
¡û
>W1911787986
QYBB01000011
Alphaproteobacteria
Lichenibacterium minor RmlP026 [QYBB]
54001
54094
+
Ser
GCT
[ENA]
¡û
>W1911788031
QYBC01000008
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
76208
76115
-
Ser
GCT
[ENA]
¡û
>W1911809196
QYYC01000050
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
529343
529250
-
Ser
GCT
[ENA]
¡û
>W1911809209
QYYD01000005
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
97005
97098
+
Ser
GCT
[ENA]
¡û
>W1810068802
PDZR01000018
Alphaproteobacteria
Methylocella silvestris TVC [PDZR]
44578
44671
+
Ser
GCT
[ENA]
¡û
>W1810089293
PGEQ01000001
Alphaproteobacteria
Bradyrhizobium lablabi GAS165 [PGEQ]
2549884
2549791
-
Ser
GCT
[ENA]
¡û
>W1810089623
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
2348966
2349059
+
Ser
GCT
[ENA]
¡û
>W1810330566
PUIV01000014
Alphaproteobacteria
Methylosinus sporium DSM 17706 [PUIV]
74781
74688
-
Ser
GCT
[ENA]
¡û
>W1810368611
PVZS01000037
Alphaproteobacteria
Alsobacter soli SH9 [PVZS]
20969
21062
+
Ser
GCT
[ENA]
¡û
>W1810658599
QJJK01000007
Alphaproteobacteria
Chelatococcus asaccharovorans DSM 6462 [QJJK]
137252
137159
-
Ser
GCT
[ENA]
¡û
>W1810672307
QJTI01000006
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
147866
147773
-
Ser
GCT
[ENA]
¡û
>W1810679432
QKQS01000016
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
198565
198472
-
Ser
GCT
[ENA]
¡û
>W1810720665
QNRK01000010
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
115062
114969
-
Ser
GCT
[ENA]
¡û
>W1810787525
QRDT01000030
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
49949
49856
-
Ser
GCT
[ENA]
¡û
>W1810884368
QUMO01000003
Alphaproteobacteria
Methylovirgula ligni BW863 [QUMO]
499411
499504
+
Ser
GCT
[ENA]
¡û
>W1810884422
QUMP01000030
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
49949
49856
-
Ser
GCT
[ENA]
¡û
>W10112820
ADFI01000010
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
81617
81524
-
Ser
GCT
[ENA]
¡û
>W10118822
ADVE01000007
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
19053
18960
-
Ser
GCT
[ENA]
¡û
>C10110777
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
2925586
2925493
-
Ser
GCT
[Ensembl]
¡û
>W11116047
ADFI01000010
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
81617
81524
-
Ser
GCT
[ENA]
¡û
>C11118758
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
3292676
3292769
+
Ser
GCT
[Ensembl]
¡û
>W11124994
ADVE01000007
Alphaproteobacteria
Methylosinus trichosporium OB3b [ADVE]
19053
18960
-
Ser
GCT
[ENA]
¡û
>W1511517279
JXXE01000612
Alphaproteobacteria
Rhodopseudomonas palustris BAL398 [JXXE]
1131
1038
-
Ser
GCT
[ENA]
¡û
>W121127135
CAFI01000290
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
104
11
-
Ser
GCT
[ENA]
¡û
>W121127171
CAFJ01000251
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
15686
15593
-
Ser
GCT
[ENA]
¡û
>C131000837
AP012603
Alphaproteobacteria
Bradyrhizobium oligotrophicum S58 [AP012603]
3720036
3719943
-
Ser
GCT
[Ensembl]
¡û
>W1610649517
LJIC01000041
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
826
733
-
Ser
GCT
[ENA]
¡û
>W1610941014
LUUM01000090
Alphaproteobacteria
Methylosinus sp. R-45379 [LUUM]
6964
6871
-
Ser
GCT
[ENA]
¡û
>W1611012755
LXWX01000035
Alphaproteobacteria
Methylosinus sp. 3S-1 [LXWX]
135886
135793
-
Ser
GCT
[ENA]
¡û
>W1710535158
FNSI01000001
Alphaproteobacteria
Beijerinckia sp. 28-YEA-48 [FNSI]
911360
911267
-
Ser
GCT
[ENA]
¡û
>W1710548427
FODT01000010
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
33612
33519
-
Ser
GCT
[ENA]
¡û
>W1710567161
FOSN01000002
Alphaproteobacteria
Methylocapsa palsarum [FOSN]
65134
65041
-
Ser
GCT
[ENA]
¡û
>W1710609864
FYDG01000007
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
121976
121883
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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