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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.60989 (31 seq.)
>W1711506338
MKWH01000064
Bacteroidota
Sphingobacterium sp. 40-24 [MKWH]
52952
52865
-
Leu
TAA
[ENA]
¡û
>W1711712741
MTCM01000001
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
1917604
1917691
+
Leu
TAA
[ENA]
¡û
>W1711712776
MTCM01000004
Bacteroidota
Sphingobacterium sp. CZ-UAM [MTCM]
87410
87497
+
Leu
TAA
[ENA]
¡û
>WENV183727733
PJTP01000127
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
4
89
+
Leu
TAA
[ENA]
¢þ
>WENV183727767
PJTP01000177
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
36
121
+
Leu
TAA
[ENA]
¢þ
>WENV183727975
PJTP01011516
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
821
736
-
Leu
TAA
[ENA]
¢þ
>WENV183729893
PJTR01000154
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
23415
23500
+
Leu
TAA
[ENA]
¢þ
>WENV183731030
PJTS01004264
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
727
812
+
Leu
TAA
[ENA]
¢þ
>WENV183731820
PJTT01000215
[PJTT] soil metagenome; Soil (2) enriched on wood chips
23415
23500
+
Leu
TAA
[ENA]
¢þ
>WENV183736175
PJUC01000082
[PJUC] soil metagenome; Soil enriched on filter paper
81176
81091
-
Leu
TAA
[ENA]
¢þ
>WENV183736182
PJUC01000092
[PJUC] soil metagenome; Soil enriched on filter paper
72704
72619
-
Leu
TAA
[ENA]
¢þ
>WENV183736685
PJUC01040271
[PJUC] soil metagenome; Soil enriched on filter paper
122
37
-
Leu
TAA
[ENA]
¢þ
>WENV183740236
PJUF01000805
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
74
159
+
Leu
TAA
[ENA]
¢þ
>WENV183740602
PJUF01004015
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
74
159
+
Leu
TAA
[ENA]
¢þ
>WENV183743268
PJUJ01000287
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
32644
32559
-
Leu
TAA
[ENA]
¢þ
>WENV183743535
PJUJ01004537
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1760
1675
-
Leu
TAA
[ENA]
¢þ
>WENV183743752
PJUJ01036631
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
195
280
+
Leu
TAA
[ENA]
¢þ
>C191157524
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2435037
2435122
+
Leu
TAA
-
¡û
>C191157526
CP038029
Bacteroidota
Sphingobacterium psychroaquaticum SJ-25 [CP038029]
2444450
2444535
+
Leu
TAA
-
¡û
>C191158021
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
888656
888741
+
Leu
TAA
-
¡û
>C191158024
CP038159
Bacteroidota
Sphingobacterium sp. CZ-2 [CP038159]
1055048
1055133
+
Leu
TAA
-
¡û
>C191221547
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
2677454
2677539
+
Leu
TAA
-
¡û
>C191221572
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
2405800
2405715
-
Leu
TAA
-
¡û
>W1810069047
PEAZ01000085
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
664
579
-
Leu
TAA
[ENA]
¡û
>W1810069054
PEAZ01000106
Bacteroidota
Sphingobacterium sp. 1.A.4 [PEAZ]
4752
4837
+
Leu
TAA
[ENA]
¡û
>W1810069066
PEBA01000004
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
76648
76563
-
Leu
TAA
[ENA]
¡û
>W1810069072
PEBA01000016
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
50248
50333
+
Leu
TAA
[ENA]
¡û
>W1511108330
JJMU01000054
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
141720
141635
-
Leu
TAA
[ENA]
¡û
>W1511108332
JJMU01000054
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
117629
117544
-
Leu
TAA
[ENA]
¡û
>W1710538692
FNUT01000006
Bacteroidota
Sphingobacterium lactis [FNUT]
292419
292504
+
Leu
TAA
[ENA]
¡û
>W1710538712
FNUT01000013
Bacteroidota
Sphingobacterium lactis [FNUT]
34485
34570
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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