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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61237 (96 seq.)
>W1710867451
LMIH01000008
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
27022
26936
-
Leu
TAG
[ENA]
¡û
>W1710867539
LMIJ01000001
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
374825
374739
-
Leu
TAG
[ENA]
¡û
>W1710893618
LNEY01000012
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
90911
90825
-
Leu
TAG
[ENA]
¡û
>W1710990968
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
29756
29670
-
Leu
TAG
[ENA]
¡û
>W1711073157
LSIH01000093
Betaproteobacteria
Acidovorax delafieldii [LSIH]
21827
21741
-
Leu
TAG
[ENA]
¡û
>W1711167235
LVWD01000013
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
556104
556018
-
Leu
TAG
[ENA]
¡û
>W1711394894
MESN01000374
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_60_6 [MESN]
152
66
-
Leu
TAG
[ENA]
¡û
>W1711395022
MESQ01000085
Betaproteobacteria
Burkholderiales bacterium RIFOXYD12_FULL_59_19 [MESQ]
6356
6270
-
Leu
TAG
[ENA]
¡û
>W1711583945
MNXW01000029
Betaproteobacteria
Comamonadaceae bacterium CG2_30_57_122 [MNXW]
15953
16039
+
Leu
TAG
[ENA]
¡û
>W1711583989
MNXX01000083
Betaproteobacteria
Comamonadaceae bacterium CG2_30_59_20 [MNXX]
6227
6141
-
Leu
TAG
[ENA]
¡û
>W1711628332
MPOE01000003
Betaproteobacteria
Comamonas kerstersii 202149 [MPOE]
29590
29504
-
Leu
TAG
[ENA]
¡û
>W1711628443
MPOF01000013
Betaproteobacteria
Comamonas kerstersii 121606 [MPOF]
157273
157187
-
Leu
TAG
[ENA]
¡û
>W1711721735
MTJN01000002
Betaproteobacteria
Rhodoferax fermentans [MTJN]
428745
428659
-
Leu
TAG
[ENA]
¡û
>W1711751229
MUNO01000050
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
57141
57227
+
Leu
TAG
[ENA]
¡û
>C171063214
CP017476
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [CP017476]
2931926
2931840
-
Leu
TAG
-
¡û
>C171104854
CP020121
Betaproteobacteria
Comamonas kerstersii 8943 [CP020121]
3518833
3518747
-
Leu
TAG
-
¡û
>W131220732
ATZS01000143
Betaproteobacteria
beta proteobacterium SCGC AAA027-I06 [ATZS]
23774
23688
-
Leu
TAG
[ENA]
¡û
>C017311
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
3119812
3119726
-
Leu
TAG
[Ensembl]
¡û
>WENV180267502
OBEQ011860764
[OBEQ] groundwater metagenome; groundwater
2869
2783
-
Leu
TAG
[ENA]
¢þ
>WENV180391157
OBPM01022404
[OBPM] marine metagenome; ENVO:00002010
493
407
-
Leu
TAG
[ENA]
¢þ
>WENV181365460
OFPR01000653
[OFPR] sediment metagenome; Lake sediment
1049
963
-
Leu
TAG
[ENA]
¢þ
>WENV181367472
OFQB01002612
[OFQB] freshwater metagenome; Freshwater Lake
1030
944
-
Leu
TAG
[ENA]
¢þ
>WENV181368255
OFQL01000024
[OFQL] freshwater metagenome; Freshwater Lake
11236
11322
+
Leu
TAG
[ENA]
¢þ
>WENV181368896
OFQN01002829
[OFQN] freshwater metagenome; Freshwater Lake
1463
1377
-
Leu
TAG
[ENA]
¢þ
>WENV181369352
OFQP01000599
[OFQP] freshwater metagenome; Freshwater Lake
1615
1701
+
Leu
TAG
[ENA]
¢þ
>WENV181369940
OFQR01002675
[OFQR] freshwater metagenome; Freshwater Lake
538
624
+
Leu
TAG
[ENA]
¢þ
>WENV181370059
OFQR01009668
[OFQR] freshwater metagenome; Freshwater Lake
512
426
-
Leu
TAG
[ENA]
¢þ
>WENV181370129
OFQS01000026
[OFQS] freshwater metagenome; Freshwater Lake
25076
25162
+
Leu
TAG
[ENA]
¢þ
>WENV181370683
OFQT01003000
[OFQT] freshwater metagenome; Freshwater Lake
185
271
+
Leu
TAG
[ENA]
¢þ
>WENV181370788
OFQT01011243
[OFQT] freshwater metagenome; Freshwater Lake
537
451
-
Leu
TAG
[ENA]
¢þ
>WENV181377385
OFRA01008421
[OFRA] wastewater metagenome; Lake Maggiore Verbania
556
470
-
Leu
TAG
[ENA]
¢þ
>WENV181379293
OFRD01000309
[OFRD] wastewater metagenome; Exp Tend CN 100WW
2660
2574
-
Leu
TAG
[ENA]
¢þ
>WENV181379748
OFRD01007487
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1168
1254
+
Leu
TAG
[ENA]
¢þ
>WENV181379807
OFRD01009692
[OFRD] wastewater metagenome; Exp Tend CN 100WW
127
213
+
Leu
TAG
[ENA]
¢þ
>WENV181384858
OFRI01016988
[OFRI] wastewater metagenome; Exp Tend VB 90WW
1218
1132
-
Leu
TAG
[ENA]
¢þ
>WENV181391775
OFRU01000669
[OFRU] freshwater metagenome; Freshwater Lake
454
368
-
Leu
TAG
[ENA]
¢þ
>WENV181395649
OFSB01000126
[OFSB] freshwater metagenome; Freshwater Lake
2931
3017
+
Leu
TAG
[ENA]
¢þ
>WENV181400488
OFSF01008029
[OFSF] wastewater metagenome; Exp Tend VB 100WW
465
551
+
Leu
TAG
[ENA]
¢þ
>W141265982
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
3399262
3399348
+
Leu
TAG
[ENA]
¡û
>WENV183724823
PJQE01075116
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
476
390
-
Leu
TAG
[ENA]
¢þ
>WENV170559844
CXWL01160267
[CXWL] groundwater metagenome; biofilm material
1924
2010
+
Leu
TAG
[ENA]
¢þ
>WENV170559930
CXWL01178017
[CXWL] groundwater metagenome; biofilm material
1724
1638
-
Leu
TAG
[ENA]
¢þ
>WENV170604206
FUWD010373631
[FUWD] metagenome; unknown
530
616
+
Leu
TAG
[ENA]
¢þ
>WENV170639627
JFJP01005432
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
22224
22310
+
Leu
TAG
[ENA]
¢þ
>WENV170639680
JFJP01005872
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11904
11818
-
Leu
TAG
[ENA]
¢þ
>WENV170639690
JFJP01005892
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
11753
11667
-
Leu
TAG
[ENA]
¢þ
>WENV170639710
JFJP01006107
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10129
10043
-
Leu
TAG
[ENA]
¢þ
>WENV170639722
JFJP01006294
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
9967
9881
-
Leu
TAG
[ENA]
¢þ
>WENV170639850
JFJP01010060
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4350
4264
-
Leu
TAG
[ENA]
¢þ
>WENV170705549
LNAO01002145
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2346
2260
-
Leu
TAG
[ENA]
¢þ
>WENV170706280
LNAP01001833
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
21169
21083
-
Leu
TAG
[ENA]
¢þ
>WENV170706612
LNAP01004652
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4946
5032
+
Leu
TAG
[ENA]
¢þ
>WENV170709484
LNFM01000387
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
29579
29665
+
Leu
TAG
[ENA]
¢þ
>W141561757
JHYS01000007
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
71225
71139
-
Leu
TAG
[ENA]
¡û
>W09104883
AANM01000019
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
58644
58730
+
Leu
TAG
[ENA]
¡û
>W141695450
JMDZ01000002
Betaproteobacteria
Polaromonas glacialis [JMDZ]
122113
122199
+
Leu
TAG
[ENA]
¡û
>W1910888433
NERU01000003
Betaproteobacteria
Limnohabitans sp. WS1 [NERU]
197760
197846
+
Leu
TAG
[ENA]
¡û
>W1910888498
NERV01000003
Betaproteobacteria
Limnohabitans sp. T6-5 [NERV]
664606
664692
+
Leu
TAG
[ENA]
¡û
>W1910888532
NERW01000002
Betaproteobacteria
Limnohabitans sp. T6-20 [NERW]
759572
759658
+
Leu
TAG
[ENA]
¡û
>W1910888610
NERY01000001
Betaproteobacteria
Limnohabitans sp. MMS-10A-178 [NERY]
1776933
1777019
+
Leu
TAG
[ENA]
¡û
>W1910888645
NERZ01000002
Betaproteobacteria
Limnohabitans sp. MMS-10A-160 [NERZ]
565506
565420
-
Leu
TAG
[ENA]
¡û
>W1910888787
NESC01000008
Betaproteobacteria
Limnohabitans sp. Jir72 [NESC]
37171
37257
+
Leu
TAG
[ENA]
¡û
>W1910888858
NESE01000002
Betaproteobacteria
Limnohabitans sp. Hippo4 [NESE]
433020
433106
+
Leu
TAG
[ENA]
¡û
>W1910888933
NESG01000004
Betaproteobacteria
Limnohabitans sp. G3-2 [NESG]
210050
210136
+
Leu
TAG
[ENA]
¡û
>W1910889053
NESJ01000003
Betaproteobacteria
Limnohabitans sp. 2KL-51 [NESJ]
255790
255704
-
Leu
TAG
[ENA]
¡û
>W1910889084
NESK01000001
Betaproteobacteria
Limnohabitans sp. 2KL-17 [NESK]
27067
27153
+
Leu
TAG
[ENA]
¡û
>W1910889184
NESM01000002
Betaproteobacteria
Limnohabitans sp. 15K [NESM]
202357
202271
-
Leu
TAG
[ENA]
¡û
>W1910889224
NESN01000001
Betaproteobacteria
Limnohabitans parvus II-B4 [NESN]
285158
285072
-
Leu
TAG
[ENA]
¡û
>WENV026740
AACY020989498
Marine microbial communities from Global Ocean Sampling (GOS)
487
573
+
Leu
TAG
[ENA]
>W1911740732
QUSW01000004
Betaproteobacteria
Albitalea terrae S-16 [QUSW]
233998
233912
-
Leu
TAG
[ENA]
¡û
>W1911775403
QXNC01000006
Betaproteobacteria
Simplicispira metamorpha NBRC 13960 [QXNC]
63658
63572
-
Leu
TAG
[ENA]
¡û
>SRA1003122
SRR002326.217002
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
85
171
+
Leu
TAG
[SRA]
>SRA1004083
SRR002328.137283
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
184
98
-
Leu
TAG
[SRA]
>W1810750709
QOZT01000098
Betaproteobacteria
Acidovorax sp. BoFeN1 [QOZT]
7569
7483
-
Leu
TAG
[ENA]
¡û
>W1510720048
CXOM01000001
Betaproteobacteria
Limnohabitans sp. Rim11 [CXOM]
333206
333292
+
Leu
TAG
[ENA]
¡û
>W1510720103
CXON01000008
Betaproteobacteria
Limnohabitans sp. 2KL-3 [CXON]
128942
128856
-
Leu
TAG
[ENA]
¡û
>W1510720154
CXOO01000034
Betaproteobacteria
Limnohabitans sp. DM1 [CXOO]
26197
26283
+
Leu
TAG
[ENA]
¡û
>W1510720192
CXOP01000002
Betaproteobacteria
Limnohabitans sp. 2KL-27 [CXOP]
1999260
1999174
-
Leu
TAG
[ENA]
¡û
>W1511691390
LFYT01000003
Betaproteobacteria
Limnohabitans planktonicus II-D5 [LFYT]
388665
388579
-
Leu
TAG
[ENA]
¡û
>C161037047
CP011774
Betaproteobacteria
Limnohabitans sp. 63ED37-2 [CP011774]
1069365
1069451
+
Leu
TAG
[Ensembl]
¡û
>C161037582
CP011834
Betaproteobacteria
Limnohabitans sp. 103DPR2 [CP011834]
2254053
2253967
-
Leu
TAG
[Ensembl]
¡û
>WENV057632
AACY023300813
Marine microbial communities from Global Ocean Sampling (GOS)
389
301
-
Leu
TAG
[ENA]
>W121112444
ALKN01000045
Betaproteobacteria
Limnohabitans sp. Rim28 [ALKN]
293923
293837
-
Leu
TAG
[ENA]
¡û
>W121112460
ALKO01000003
Betaproteobacteria
Limnohabitans sp. Rim47 [ALKO]
339653
339739
+
Leu
TAG
[ENA]
¡û
>W1610189961
FBYA01000001
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
804874
804960
+
Leu
TAG
[ENA]
¡û
>W1610610006
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
45269
45355
+
Leu
TAG
[ENA]
¡û
>W1610623703
LHUP01000175
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
14170
14256
+
Leu
TAG
[ENA]
¡û
>W1610729797
LMIH01000008
Betaproteobacteria
Acidovorax sp. Root217 [LMIH]
27022
26936
-
Leu
TAG
[ENA]
¡û
>W1610729885
LMIJ01000001
Betaproteobacteria
Acidovorax sp. Root219 [LMIJ]
374825
374739
-
Leu
TAG
[ENA]
¡û
>W1610753884
LNEY01000012
Betaproteobacteria
Burkholderiales bacterium Ga0077547 [LNEY]
90911
90825
-
Leu
TAG
[ENA]
¡û
>W1610845640
LPXH01000036
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
29756
29670
-
Leu
TAG
[ENA]
¡û
>W1610912462
LSIH01000093
Betaproteobacteria
Acidovorax delafieldii [LSIH]
21827
21741
-
Leu
TAG
[ENA]
¡û
>W1610977566
LVWD01000013
Betaproteobacteria
Hydrogenophaga crassostreae LPB0072 [LVWD]
556104
556018
-
Leu
TAG
[ENA]
¡û
>W1710191577
FBYA01000001
Betaproteobacteria
Limnohabitans sp. Rim47 [FBYA]
804874
804960
+
Leu
TAG
[ENA]
¡û
>W1710731351
LFYP01000129
Betaproteobacteria
Comamonas kerstersii [LFYP]
45269
45355
+
Leu
TAG
[ENA]
¡û
>W1710754793
LHUP01000175
Betaproteobacteria
Acidovorax sp. SD340 [LHUP]
14170
14256
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK