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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61285 (30 seq.)
>W1711096455
LTHT01000150
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
6377
6291
-
Leu
GAG
[ENA]
¡û
>WENV181100922
OECJ01056891
[OECJ] human metagenome; G_DNA_Stool
101
15
-
Leu
GAG
[ENA]
¢þ
>WENV181458611
OGEK01000206
[OGEK] metagenome; Human gut stool
10331
10417
+
Leu
GAG
[ENA]
¢þ
>WENV181474377
OGFC01011148
[OGFC] metagenome; Human gut stool
277
191
-
Leu
GAG
[ENA]
¢þ
>WENV181557787
OGIW01000157
[OGIW] metagenome; Human gut stool
24807
24721
-
Leu
GAG
[ENA]
¢þ
>WENV181560288
OGJC01000040
[OGJC] metagenome; Human gut stool
96290
96376
+
Leu
GAG
[ENA]
¢þ
>WENV181561243
OGJD01000618
[OGJD] metagenome; Human gut stool
385
299
-
Leu
GAG
[ENA]
¢þ
>WENV181580081
OGJZ01004547
[OGJZ] metagenome; Human gut stool
1525
1439
-
Leu
GAG
[ENA]
¢þ
>WENV181627829
OGMN01007401
[OGMN] metagenome; Human gut stool
144
230
+
Leu
GAG
[ENA]
¢þ
>WENV181948021
OGZE01000182
[OGZE] human gut metagenome; faeces
11292
11206
-
Leu
GAG
[ENA]
¢þ
>WENV181965265
OGZT01000059
[OGZT] human gut metagenome; faeces
40732
40646
-
Leu
GAG
[ENA]
¢þ
>WENV181970933
OGZY01000414
[OGZY] human gut metagenome; faeces
213
127
-
Leu
GAG
[ENA]
¢þ
>WENV181987295
OHAM01048197
[OHAM] human gut metagenome; faeces
132
46
-
Leu
GAG
[ENA]
¢þ
>WENV181994114
OHAS01011549
[OHAS] human gut metagenome; faeces
3795
3881
+
Leu
GAG
[ENA]
¢þ
>WENV182866322
OKRR01000036
[OKRR] human gut metagenome; faeces
73509
73595
+
Leu
GAG
[ENA]
¢þ
>WENV183290188
OLSH01000021
[OLSH] human gut metagenome; faeces
172909
172995
+
Leu
GAG
[ENA]
¢þ
>WENV183764122
PPYE01315444
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
225
139
-
Leu
GAG
[ENA]
¢þ
>WENV183780536
PPYF01171934
[PPYF] human gut metagenome; stool from patient with Crohn's disease
297
211
-
Leu
GAG
[ENA]
¢þ
>C181003939
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
2196551
2196465
-
Leu
GAG
-
¡û
>C181161003
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2482000
2482086
+
Leu
GAG
-
¡û
>C181161061
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
2739196
2739282
+
Leu
GAG
-
¡û
>C181216757
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
1188168
1188254
+
Leu
GAG
-
¡û
>C191210248
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1648850
1648764
-
Leu
GAG
-
¡û
>C191219255
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1051284
1051370
+
Leu
GAG
-
¡û
>W09118784
ACDH01000044
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
53109
53195
+
Leu
GAG
[ENA]
¡û
>W09125197
ACIE01000081
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
114560
114646
+
Leu
GAG
[ENA]
¡û
>W1810791335
QRIG01000002
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
177878
177964
+
Leu
GAG
[ENA]
¡û
>W1810818402
QSDE01000026
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
11721
11635
-
Leu
GAG
[ENA]
¡û
>W1810832234
QSOW01000021
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
49999
50085
+
Leu
GAG
[ENA]
¡û
>W121021728
AGWJ01000001
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
11896
11810
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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