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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61286 (31 seq.)
>W1711096459
LTHT01000199
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
35513
35599
+
Leu
CAA
[ENA]
¡û
>WENV181428154
OGCU01002858
[OGCU] metagenome; Human gut stool
247
333
+
Leu
CAA
[ENA]
¢þ
>WENV181458750
OGEK01000432
[OGEK] metagenome; Human gut stool
34540
34626
+
Leu
CAA
[ENA]
¢þ
>WENV181474407
OGFC01014809
[OGFC] metagenome; Human gut stool
1065
1151
+
Leu
CAA
[ENA]
¢þ
>WENV181557478
OGIV01020513
[OGIV] metagenome; Human gut stool
1280
1366
+
Leu
CAA
[ENA]
¢þ
>WENV181557736
OGIW01000089
[OGIW] metagenome; Human gut stool
76141
76227
+
Leu
CAA
[ENA]
¢þ
>WENV181560412
OGJC01000155
[OGJC] metagenome; Human gut stool
34705
34791
+
Leu
CAA
[ENA]
¢þ
>WENV181561545
OGJD01011492
[OGJD] metagenome; Human gut stool
163
249
+
Leu
CAA
[ENA]
¢þ
>WENV181580258
OGJZ01017740
[OGJZ] metagenome; Human gut stool
642
728
+
Leu
CAA
[ENA]
¢þ
>WENV181627822
OGMN01006989
[OGMN] metagenome; Human gut stool
1622
1536
-
Leu
CAA
[ENA]
¢þ
>WENV181948274
OGZE01001144
[OGZE] human gut metagenome; faeces
5553
5639
+
Leu
CAA
[ENA]
¢þ
>WENV181960139
OGZN01016587
[OGZN] human gut metagenome; faeces
205
119
-
Leu
CAA
[ENA]
¢þ
>WENV181965461
OGZT01000789
[OGZT] human gut metagenome; faeces
14430
14344
-
Leu
CAA
[ENA]
¢þ
>WENV181971007
OGZY01000889
[OGZY] human gut metagenome; faeces
443
357
-
Leu
CAA
[ENA]
¢þ
>WENV181994461
OHAS01048653
[OHAS] human gut metagenome; faeces
448
534
+
Leu
CAA
[ENA]
¢þ
>WENV182866559
OKRR01000469
[OKRR] human gut metagenome; faeces
10596
10510
-
Leu
CAA
[ENA]
¢þ
>WENV183290298
OLSH01000102
[OLSH] human gut metagenome; faeces
87803
87889
+
Leu
CAA
[ENA]
¢þ
>WENV183764121
PPYE01315431
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
978
1064
+
Leu
CAA
[ENA]
¢þ
>WENV183780528
PPYF01171873
[PPYF] human gut metagenome; stool from patient with Crohn's disease
24230
24316
+
Leu
CAA
[ENA]
¢þ
>C181003941
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
1817925
1817839
-
Leu
CAA
-
¡û
>C181161010
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
2622620
2622534
-
Leu
CAA
-
¡û
>C181161063
CP028105
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [CP028105]
3098015
3098101
+
Leu
CAA
-
¡û
>C181216759
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
1548387
1548473
+
Leu
CAA
-
¡û
>C191210211
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
1508283
1508369
+
Leu
CAA
-
¡û
>C191219309
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
1239905
1239819
-
Leu
CAA
-
¡û
>W09118788
ACDH01000051
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
110034
110120
+
Leu
CAA
[ENA]
¡û
>W09125198
ACIE01000092
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
10598
10512
-
Leu
CAA
[ENA]
¡û
>W1810791339
QRIG01000007
Fusobacteriota
Fusobacterium varium AM22-17 [QRIG]
10309
10223
-
Leu
CAA
[ENA]
¡û
>W1810818373
QSDE01000001
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
214893
214979
+
Leu
CAA
[ENA]
¡û
>W1810832207
QSOW01000002
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
179779
179865
+
Leu
CAA
[ENA]
¡û
>W121021730
AGWJ01000014
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
101151
101065
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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