This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.61762 (20 seq.)
>W131062273
ANJR01000019
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
88460
88546
+
Leu
TAA
[ENA]
¡û
>W131046008
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
318614
318528
-
Leu
TAA
[ENA]
¡û
>W131046050
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
330667
330581
-
Leu
TAA
[ENA]
¡û
>W1712110312
NJGV01000002
Betaproteobacteria
Herbaspirillum aquaticum [NJGV]
65525
65439
-
Leu
TAA
[ENA]
¡û
>W141223534
BADJ01000704
Betaproteobacteria
Herbaspirillum sp. B501 [BADJ]
5914
5828
-
Leu
TAA
[ENA]
¡û
>WENV183730181
PJTR01002373
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
1314
1400
+
Leu
TAA
[ENA]
¢þ
>WENV183731260
PJTS01028687
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
201
287
+
Leu
TAA
[ENA]
¢þ
>WENV183735001
PJUA01000368
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
6304
6390
+
Leu
TAA
[ENA]
¢þ
>WENV183735718
PJUB01000856
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
2943
3029
+
Leu
TAA
[ENA]
¢þ
>WENV183736604
PJUC01021288
[PJUC] soil metagenome; Soil enriched on filter paper
259
173
-
Leu
TAA
[ENA]
¢þ
>WENV170165295
CEON01101142
[CEON] marine metagenome genome assembly TARA_034_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
575
661
+
Leu
TAA
[ENA]
¢þ
>WENV170201488
CEPQ01025390
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
8916
9002
+
Leu
TAA
[ENA]
¢þ
>C191124269
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
2084118
2084032
-
Leu
TAA
-
¡û
>C191156659
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2235940
2235854
-
Leu
TAA
-
¡û
>W1910577837
JUGD01000004
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
152194
152280
+
Leu
TAA
[ENA]
¡û
>W1910578282
JWJC01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
315507
315421
-
Leu
TAA
[ENA]
¡û
>W1810194056
PKOI01000016
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
83650
83564
-
Leu
TAA
[ENA]
¡û
>C151087604
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2228366
2228280
-
Leu
TAA
[Ensembl]
¡û
>C10107837
CP002039
Betaproteobacteria
Herbaspirillum seropedicae SmR1 [CP002039]
2228537
2228451
-
Leu
TAA
[Ensembl]
¡û
>C161060477
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
2137973
2137887
-
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK