This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62266 (18 seq.)
>W131238025
AUUA01000001
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [AUUA]
938812
938726
-
Leu
TAA
[ENA]
¡û
>W131219612
ATYS01000007
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
226
312
+
Leu
TAA
[ENA]
¡û
>W131219638
ATYS01000024
Gammaproteobacteria
Budvicia aquatica DSM 5075 = ATCC 35567 [ATYS]
6762
6848
+
Leu
TAA
[ENA]
¡û
>WENV183745501
POVV01000035
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
246
332
+
Leu
TAA
[ENA]
¢þ
>WENV183745510
POVV01000040
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
16307
16393
+
Leu
TAA
[ENA]
¢þ
>C181175876
CP029185
Gammaproteobacteria
Limnobaculum parvum HYN0051 [CP029185]
1115387
1115301
-
Leu
TAA
-
¡û
>C181215539
LS483470
Gammaproteobacteria
Leminorella richardii NCTC12151 [LS483470]
1592414
1592500
+
Leu
TAA
-
¡û
>C191130356
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
1562606
1562692
+
Leu
TAA
-
¡û
>C191130374
CP034752
Gammaproteobacteria
Jinshanibacter zhutongyuii CF-458 [CP034752]
3791631
3791717
+
Leu
TAA
-
¡û
>C191214337
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
1610343
1610429
+
Leu
TAA
-
¡û
>C191214347
LR134531
Gammaproteobacteria
Pragia fontium NCTC12284 [LR134531]
2837534
2837620
+
Leu
TAA
-
¡û
>W141710665
JMPN01000011
Gammaproteobacteria
Leminorella grimontii ATCC 33999 = DSM 5078 [JMPN]
27394
27480
+
Leu
TAA
[ENA]
¡û
>W1910230296
FOLW01000002
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
406695
406781
+
Leu
TAA
[ENA]
¡û
>W1910230320
FOLW01000007
Gammaproteobacteria
Pragia fontium DSM 5563 = ATCC 49100 [FOLW]
36072
36158
+
Leu
TAA
[ENA]
¡û
>W1911573081
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
5010781
5010867
+
Leu
TAA
[ENA]
¡û
>W1911573096
PDDX01000001
Gammaproteobacteria
Budvicia aquatica FDAARGOS_387 [PDDX]
4261238
4261152
-
Leu
TAA
[ENA]
¡û
>C151068487
CP010423
Gammaproteobacteria
Pragia fontium 24613 [CP010423]
1759037
1759123
+
Leu
TAA
[Ensembl]
¡û
>C151068497
CP010423
Gammaproteobacteria
Pragia fontium 24613 [CP010423]
2972028
2972114
+
Leu
TAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK