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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62363 (15 seq.)
>W131206136
ATFL01000006
Actinomycetota
Propionibacterium sp. oral taxon 192 oral taxon 192 str. F0372 [ATFL]
27059
27146
+
Ser
CGA
[ENA]
¡û
>C171130949
LT706985
Actinomycetota
Vaginimicrobium propionicum Marseille-P3275 [LT706985]
1704402
1704489
+
Ser
CGA
-
¡û
>WENV180097823
MTBK01212898
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
907
819
-
Ser
CGA
[ENA]
¢þ
>WENV183148278
OLON01025757
[OLON] human gut metagenome; faeces
915
828
-
Ser
CGA
[ENA]
¢þ
>C181218336
LT576034
Actinomycetota
Propionibacterium freudenreichii [LT576034]
438545
438632
+
Ser
CGA
-
¡û
>C181218380
LT576038
Actinomycetota
Propionibacterium freudenreichii [LT576038]
442613
442700
+
Ser
CGA
-
¡û
>C181219205
LT618779
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
442613
442700
+
Ser
CGA
-
¡û
>C181219469
LT618786
Actinomycetota
Propionibacterium freudenreichii [LT618785, LT618786]
467787
467874
+
Ser
CGA
-
¡û
>C181219531
LT618787
Actinomycetota
Propionibacterium freudenreichii [LT618787, LT618788]
2132252
2132165
-
Ser
CGA
-
¡û
>C181219779
LT618793
Actinomycetota
Propionibacterium freudenreichii [LT618793, LT618794]
393757
393844
+
Ser
CGA
-
¡û
>W1910377747
FUKQ01000047
Actinomycetota
Luteococcus japonicus LSP_Lj1 [FUKQ]
33082
32995
-
Ser
CGA
[ENA]
¡û
>W1510061676
CCYN01000015
Actinomycetota
Propionibacterium freudenreichii CIRM-BIA 118 [CCYN]
8419
8506
+
Ser
CGA
[ENA]
¡û
>W1510061970
CCYU01000046
Actinomycetota
Propionibacterium freudenreichii ITG P18 [CCYU]
23236
23149
-
Ser
CGA
[ENA]
¡û
>W1510063321
CDAC01000056
Actinomycetota
Propionibacterium freudenreichii CIRM-BIA 527 [CDAC]
44731
44644
-
Ser
CGA
[ENA]
¡û
>W1710552667
FOGZ01000017
Actinomycetota
Propionibacterium cyclohexanicum [FOGZ]
20226
20313
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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