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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62477 (10 seq.)
>A171001734
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1084116
1084031
-
Leu
TAA
-
¡û
>A171004548
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
584862
584778
-
Leu
TAA
-
¡û
>A171004561
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
318983
319067
+
Leu
TAA
-
¡û
>A171004779
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
2563691
2563777
+
Leu
TAA
-
¡û
>A171004885
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
3002520
3002606
+
Leu
TAA
-
¡û
>At1415
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
2940457
2940373
-
Leu
TAA
[Ensembl]
¡û
>WENV170644056
JMBV01028824
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
166
79
-
Leu
TAA
[ENA]
¢þ
>WENV170644538
JMBW01026649
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
210
123
-
Leu
TAA
[ENA]
¢þ
>WENV170684928
LFRM01064322
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12679
12763
+
Leu
TAA
[ENA]
¢þ
>W1610670260
LKAZ01000051
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
23201
23288
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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