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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62605 (36 seq.)
>A171000116
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1143066
1142982
-
Leu
TAG
-
¡û
>A171000917
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1519275
1519191
-
Leu
TAG
-
¡û
>A171001805
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
1003638
1003721
+
Leu
TAG
-
¡û
>A171002051
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
299682
299598
-
Leu
TAG
-
¡û
>A171007721
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1529963
1529879
-
Leu
TAG
-
¡û
>WENV180220925
OBAX01000250
[OBAX] human gut metagenome; human gut
157
241
+
Leu
TAG
[ENA]
¢þ
>WENV180246468
OBDP01000160
[OBDP] human gut metagenome; human gut
10269
10185
-
Leu
TAG
[ENA]
¢þ
>WENV180544241
OCIP01022377
[OCIP] human gut metagenome; human gut
305
221
-
Leu
TAG
[ENA]
¢þ
>WENV180545349
OCIT01002201
[OCIT] human gut metagenome; human gut
487
571
+
Leu
TAG
[ENA]
¢þ
>WENV180657041
OCVV010623736
[OCVV] gut metagenome; gut
196
112
-
Leu
TAG
[ENA]
¢þ
>WENV180657045
OCVV010623736
[OCVV] gut metagenome; gut
196
112
-
Leu
TAG
[ENA]
¢þ
>WENV180661008
OCVV010980698
[OCVV] gut metagenome; gut
4674
4758
+
Leu
TAG
[ENA]
¢þ
>WENV180661013
OCVV010980698
[OCVV] gut metagenome; gut
4674
4758
+
Leu
TAG
[ENA]
¢þ
>WENV180675929
OCVV011360788
[OCVV] gut metagenome; gut
200
116
-
Leu
TAG
[ENA]
¢þ
>WENV180675933
OCVV011360788
[OCVV] gut metagenome; gut
200
116
-
Leu
TAG
[ENA]
¢þ
>WENV180871527
ODLN01090409
[ODLN] human metagenome; G_DNA_Stool
134
50
-
Leu
TAG
[ENA]
¢þ
>WENV181416918
OGCL01179986
[OGCL] hot springs metagenome; Hot spring water
268
184
-
Leu
TAG
[ENA]
¢þ
>At1560
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
337323
337406
+
Leu
TAG
[Ensembl]
¡û
>At1678
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
1160209
1160126
-
Leu
TAG
[Ensembl]
¡û
>WENV170675830
LDZQ01000830
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1203
1119
-
Leu
TAG
[ENA]
¢þ
>WENV170675908
LDZQ01001231
[LDZQ] terrestrial metagenome; oil reservoir sample I2
6260
6176
-
Leu
TAG
[ENA]
¢þ
>WENV170676707
LDZS01002002
[LDZS] terrestrial metagenome; oil reservoir sample K3
2039
1955
-
Leu
TAG
[ENA]
¢þ
>WENV170686158
LFRM01129414
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
636
552
-
Leu
TAG
[ENA]
¢þ
>W1910574935
JQJK01000016
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
172966
173049
+
Leu
TAG
[ENA]
¡û
>W1910574975
JQKN01000019
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
21006
20923
-
Leu
TAG
[ENA]
¡û
>W1910575097
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2145436
2145520
+
Leu
TAG
[ENA]
¡û
>W1910576025
JRWK01000005
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
63985
63901
-
Leu
TAG
[ENA]
¡û
>W1910635131
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
448487
448570
+
Leu
TAG
[ENA]
¡û
>W1910635186
LMVN01000029
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
56335
56251
-
Leu
TAG
[ENA]
¡û
>W1910646609
LWMS01000002
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
48154
48070
-
Leu
TAG
[ENA]
¡û
>W1910655468
LZPM01000042
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
19763
19846
+
Leu
TAG
[ENA]
¡û
>W1910656116
MAIF01000012
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
6596
6512
-
Leu
TAG
[ENA]
¡û
>W1910899142
NGJK01000015
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
45849
45933
+
Leu
TAG
[ENA]
¡û
>W1911690446
QLOE01000002
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
162989
162905
-
Leu
TAG
[ENA]
¡û
>W1911722783
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
94507
94591
+
Leu
TAG
[ENA]
¡û
>W1610612487
LGEU01000045
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
6260
6176
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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