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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62756 (48 seq.)
>W131109061
APHJ01000025
Bacteroidota
Gillisia sp. CAL575 [APHJ]
125046
125131
+
Ser
TGA
[ENA]
¡û
>W131233839
AUKH01000005
Bacteroidota
Gillisia sp. JM1 [AUKH]
452001
451914
-
Ser
TGA
[ENA]
¡û
>W131066932
ANPJ01000009
Bacteroidota
Dokdonia sp. PRO95 [ANPJ]
146102
146189
+
Ser
TGA
[ENA]
¡û
>W131236551
AUML01000035
Bacteroidota
Aquimarina muelleri DSM 19832 [AUML]
28894
28979
+
Ser
TGA
[ENA]
¡û
>WENV180109961
OAPL01017860
[OAPL] marine metagenome; ENVO:00002010 for 'seawater
299
214
-
Ser
TGA
[ENA]
¢þ
>WENV180383425
OBOU01080881
[OBOU] marine metagenome; ENV:00002010
304
389
+
Ser
TGA
[ENA]
¢þ
>WENV180636734
OCRF01050108
[OCRF] marine metagenome; niskin bottle
381
296
-
Ser
TGA
[ENA]
¢þ
>W141079134
ATLG01000016
Bacteroidota
Cellulophaga baltica 4 [ATLG]
18580
18495
-
Ser
TGA
[ENA]
¡û
>W141079202
ATLI01000015
Bacteroidota
Cellulophaga baltica 18 [ATLI]
155064
154979
-
Ser
TGA
[ENA]
¡û
>WENV182581236
OJGX01001230
[OJGX] seawater metagenome; Sea water
8767
8854
+
Ser
TGA
[ENA]
¢þ
>WENV182586144
OJHJ01004213
[OJHJ] seawater metagenome; Sea water
1340
1255
-
Ser
TGA
[ENA]
¢þ
>W141274875
JACA01000026
Bacteroidota
Aquimarina macrocephali JAMB N27 [JACA]
98119
98206
+
Ser
TGA
[ENA]
¡û
>W141274893
JACB01000014
Bacteroidota
Aquimarina megaterium XH134 [JACB]
58960
58873
-
Ser
TGA
[ENA]
¡û
>W141276307
JADR01000001
Bacteroidota
Olleya marilimosa CAM030 [JADR]
413982
413895
-
Ser
TGA
[ENA]
¡û
>WENV170535591
CEWP01079521
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10835
10750
-
Ser
TGA
[ENA]
¢þ
>WENV170537576
CEWR01015369
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
189
102
-
Ser
TGA
[ENA]
¢þ
>WENV170782032
MAAC01006654
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
18650
18737
+
Ser
TGA
[ENA]
¢þ
>WENV170782705
MAAC01011176
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
192436
192523
+
Ser
TGA
[ENA]
¢þ
>WENV170783839
MAAC01019214
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
290959
291046
+
Ser
TGA
[ENA]
¢þ
>C181175211
CP029151
Bacteroidota
Dokdonia sp. Dokd-P16 [CP029151]
33618
33533
-
Ser
TGA
-
¡û
>C191083485
CP031964
Bacteroidota
Flavobacteriaceae bacterium AU392 [CP031964]
1729724
1729639
-
Ser
TGA
-
¡û
>W141563309
JHZX01000001
Bacteroidota
Sediminibacter sp. Hel_I_10 [JHZX]
219231
219316
+
Ser
TGA
[ENA]
¡û
>W141818615
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
1266388
1266475
+
Ser
TGA
[ENA]
¡û
>W1910693668
MDGO01000013
Bacteroidota
Gaetbulibacter sp. 5U11 [MDGO]
723677
723762
+
Ser
TGA
[ENA]
¡û
>W1911535365
OMKA01000003
Bacteroidota
Aquimarina sp. Aq78 [OMKA]
38214
38299
+
Ser
TGA
[ENA]
¡û
>W1911535425
OMKB01000014
Bacteroidota
Aquimarina sp. Aq349 [OMKB]
649374
649289
-
Ser
TGA
[ENA]
¡û
>W1911535545
OMKF01000021
Bacteroidota
Aquimarina sp. Aq78 [OMKF]
38148
38233
+
Ser
TGA
[ENA]
¡û
>W1911538854
OMPD01000014
Bacteroidota
Aquimarina sp. AU58 [OMPD]
2145286
2145201
-
Ser
TGA
[ENA]
¡û
>W1911538927
OMPF01000016
Bacteroidota
Aquimarina sp. AU119 [OMPF]
1403
1488
+
Ser
TGA
[ENA]
¡û
>W1810172974
PJMS01000001
Bacteroidota
Aquimarina sp. MAR_2010_214 MAR_2010_214 Mar_2010_214 [PJMS]
3014464
3014379
-
Ser
TGA
[ENA]
¡û
>SRA1021069
SRR035083.205049
454 Sequencing (SRP001804)
24
109
+
Ser
TGA
[SRA]
>C151061207
CP009887
Bacteroidota
Cellulophaga baltica NN016038 [CP009887]
3402172
3402087
-
Ser
TGA
[Ensembl]
¡û
>C151062882
CP009976
Bacteroidota
Cellulophaga baltica 18 [CP009976]
3429331
3429246
-
Ser
TGA
[Ensembl]
¡û
>W1510012885
BBNQ01000003
Bacteroidota
Algibacter lectus JCM 19300 [BBNQ]
38766
38679
-
Ser
TGA
[ENA]
¡û
>W1510013019
BBNU01000010
Bacteroidota
Algibacter lectus JCM 19274 [BBNU]
139944
139857
-
Ser
TGA
[ENA]
¡û
>C11104724
CP002453
Bacteroidota
Cellulophaga algicola DSM 14237 [CP002453]
4140008
4139923
-
Ser
TGA
[Ensembl]
¡û
>C11111612
CP002528
Bacteroidota
Dokdonia sp. 4H-3-7-5 [CP002528]
2608123
2608210
+
Ser
TGA
[Ensembl]
¡û
>W1511320927
JQCT01000011
Bacteroidota
Cellulophaga sp. E6(2014) E6[2014] [JQCT]
15759
15674
-
Ser
TGA
[ENA]
¡û
>W1511534162
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
250360
250273
-
Ser
TGA
[ENA]
¡û
>C161105092
HG315671
Bacteroidota
Formosa agariphila KMM 3901 type strain: KMM 3901 [HG315671]
2981702
2981615
-
Ser
TGA
[Ensembl]
¡û
>W121031934
AHHE02000040
Bacteroidota
Aquimarina agarilytica ZC1 [AHHE]
11727
11640
-
Ser
TGA
[ENA]
¡û
>W121063899
AJLT01000087
Bacteroidota
Gillisia marina CBA3202 [AJLT]
1312
1399
+
Ser
TGA
[ENA]
¡û
>W1610506859
FLRG01000010
Bacteroidota
Aquimarina megaterium [FLRG]
131386
131299
-
Ser
TGA
[ENA]
¡û
>WENV078344
AAGA01000308
Fossil microbial community from Whale Fall (the West Antarctic Peninsula Shelf)
3106
3195
+
Ser
TGA
[ENA]
>W1710499077
FLRG01000010
Bacteroidota
Aquimarina megaterium [FLRG]
131386
131299
-
Ser
TGA
[ENA]
¡û
>W1710532550
FNQK01000013
Bacteroidota
Bizionia paragorgiae [FNQK]
53586
53673
+
Ser
TGA
[ENA]
¡û
>W1710559050
FOMI01000007
Bacteroidota
Algibacter pectinivorans [FOMI]
40770
40857
+
Ser
TGA
[ENA]
¡û
>W1710587937
FQYY01000004
Bacteroidota
Mesonia phycicola [FQYY]
234427
234514
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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