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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.62873 (23 seq.)
>W1711414441
MGZL01000144
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
22144
22058
-
Leu
GAG
[ENA]
¡û
>W1711414442
MGZL01000144
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_58_44 [MGZL]
21746
21660
-
Leu
GAG
[ENA]
¡û
>W131228751
AUGE01000042
Thermodesulfobacteriota
Citrifermentans bremense R1 [AUGE]
19931
19845
-
Leu
GAG
[ENA]
¡û
>w024787
AAZA01000011
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
792
880
+
Leu
GAG
[ENA]
¡û
>w024786
AAZA01000011
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [AAZA]
560
648
+
Leu
GAG
[ENA]
¡û
>w020965
AAVG01000028
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [AAVG]
3328
3416
+
Leu
GAG
[ENA]
¡û
>WENV181231409
OFEK01024931
[OFEK] activated sludge metagenome; Anaerobic digester
623
709
+
Leu
GAG
[ENA]
¢þ
>WENV181311985
OFJB01029608
[OFJB] sludge metagenome; sludge
108
194
+
Leu
GAG
[ENA]
¢þ
>W08010642
ABRF01000006
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
530
447
-
Leu
GAG
[ENA]
¡û
>W08010643
ABRF01000006
Thermodesulfobacteriota
Geobacter sp. M21 [ABRF]
300
217
-
Leu
GAG
[ENA]
¡û
>C08005295
CP001089
Thermodesulfobacteriota
Trichlorobacter lovleyi SZ [CP001089]
1722618
1722704
+
Leu
GAG
[Ensembl]
¡û
>C08005202
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
2715838
2715924
+
Leu
GAG
[Ensembl]
¡û
>C08005203
CP001124
Thermodesulfobacteriota
Citrifermentans bemidjiense Bem [CP001124]
2716070
2716156
+
Leu
GAG
[Ensembl]
¡û
>WENV170661660
JXWV01081997
[JXWV] soil metagenome; rice field; organic FYM Plot
106
20
-
Leu
GAG
[ENA]
¢þ
>W09133639
ACPJ01000072
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
13401
13487
+
Leu
GAG
[ENA]
¡û
>W09133640
ACPJ01000072
Thermodesulfobacteriota
Geobacter sp. M18 [ACPJ]
13673
13759
+
Leu
GAG
[ENA]
¡û
>C09106431
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
2185779
2185693
-
Leu
GAG
[Ensembl]
¡û
>C09106432
CP001661
Thermodesulfobacteriota
Geobacter sp. M21 [CP001661]
2185549
2185463
-
Leu
GAG
[Ensembl]
¡û
>C11109596
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
2279420
2279334
-
Leu
GAG
[Ensembl]
¡û
>C11109597
CP002479
Thermodesulfobacteriota
Geobacter sp. M18 [CP002479]
2279148
2279062
-
Leu
GAG
[Ensembl]
¡û
>W1710087190
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
1081193
1081107
-
Leu
GAG
[ENA]
¡û
>W1710087191
BDQG01000001
Thermodesulfobacteriota
Geoanaerobacter pelophilus [BDQG]
1081097
1081011
-
Leu
GAG
[ENA]
¡û
>W1710600684
FUWR01000022
Thermodesulfobacteriota
Trichlorobacter thiogenes [FUWR]
39795
39709
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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