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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63009 (64 seq.)
>W1711022877
LRAC01000087
Bacillota
Paenibacillus sp. DMB5 [LRAC]
99800
99885
+
Leu
CAG
[ENA]
¡û
>W1711022888
LRAC01000125
Bacillota
Paenibacillus sp. DMB5 [LRAC]
18719
18632
-
Leu
CAG
[ENA]
¡û
>W1711022902
LRAC01000147
Bacillota
Paenibacillus sp. DMB5 [LRAC]
232856
232769
-
Leu
CAG
[ENA]
¡û
>W131170198
ARFI01000006
Bacillota
Paenibacillus sp. HW567 [ARFI]
1647859
1647772
-
Leu
CAG
[ENA]
¡û
>W131170211
ARFI01000008
Bacillota
Paenibacillus sp. HW567 [ARFI]
575484
575399
-
Leu
CAG
[ENA]
¡û
>W131172020
ARGP01000039
Bacillota
Paenibacillus terrigena DSM 21567 [ARGP]
34328
34241
-
Leu
CAG
[ENA]
¡û
>W131175957
ARJR01000018
Bacillota
Saccharibacillus kuerlensis DSM 22868 [ARJR]
7180
7093
-
Leu
CAG
[ENA]
¡û
>W1711309506
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
1080615
1080530
-
Leu
CAG
[ENA]
¡û
>W1711309507
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
962917
962831
-
Leu
CAG
[ENA]
¡û
>W1711309508
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
958980
958893
-
Leu
CAG
[ENA]
¡û
>W1711309509
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
930761
930674
-
Leu
CAG
[ENA]
¡û
>W1711309510
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
897821
897734
-
Leu
CAG
[ENA]
¡û
>W1711632837
MPTC01000015
Bacillota
Paenibacillus odorifer [MPTC]
132788
132875
+
Leu
CAG
[ENA]
¡û
>W1711632895
MPTD01000003
Bacillota
Paenibacillus odorifer [MPTD]
323295
323208
-
Leu
CAG
[ENA]
¡û
>W1711632896
MPTD01000003
Bacillota
Paenibacillus odorifer [MPTD]
212305
212218
-
Leu
CAG
[ENA]
¡û
>W1711634121
MPTW01000001
Bacillota
Paenibacillus odorifer [MPTW]
683700
683613
-
Leu
CAG
[ENA]
¡û
>W1711634122
MPTW01000001
Bacillota
Paenibacillus odorifer [MPTW]
573755
573668
-
Leu
CAG
[ENA]
¡û
>W1711678130
MRTY01000022
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
16279
16194
-
Leu
CAG
[ENA]
¡û
>W1711678141
MRTY01000029
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
69271
69358
+
Leu
CAG
[ENA]
¡û
>W1711678142
MRTY01000036
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
37526
37613
+
Leu
CAG
[ENA]
¡û
>W131176007
ARJR01000058
Bacillota
Saccharibacillus kuerlensis DSM 22868 [ARJR]
361199
361116
-
Leu
CAG
[ENA]
¡û
>W141022523
AJTY01000041
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
17715
17628
-
Leu
CAG
[ENA]
¡û
>W141022562
AJTY01001288
Bacillota
Paenibacillus sonchi X19-5 [AJTY]
10380
10293
-
Leu
CAG
[ENA]
¡û
>WENV180315125
OBKH01022856
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
357
443
+
Leu
CAG
[ENA]
¢þ
>W141073589
ASSG01000188
Bacillota
Paenibacillus graminis RSA19 [ASSG]
4336
4421
+
Leu
CAG
[ENA]
¡û
>W141263435
CCDG010000079
Bacillota
Paenibacillus camerounensis G4 [CCDG]
3121
3206
+
Leu
CAG
[ENA]
¡û
>C151047455
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
2316412
2316499
+
Leu
CAG
[Ensembl]
¡û
>C151047456
CP009279
Bacillota
Paenibacillus sp. FSL H7-0737 [CP009279]
2407409
2407496
+
Leu
CAG
[Ensembl]
¡û
>C151047630
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
2382290
2382377
+
Leu
CAG
[Ensembl]
¡û
>C151047631
CP009281
Bacillota
Paenibacillus sp. FSL R5-0345 [CP009281]
2481660
2481747
+
Leu
CAG
[Ensembl]
¡û
>C151047780
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
227293
227378
+
Leu
CAG
[Ensembl]
¡û
>C151047805
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
2551010
2551097
+
Leu
CAG
[Ensembl]
¡û
>C151047806
CP009283
Bacillota
Paenibacillus sp. FSL R7-0273 [CP009283]
2638204
2638291
+
Leu
CAG
[Ensembl]
¡û
>C151047864
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
221367
221452
+
Leu
CAG
[Ensembl]
¡û
>C151048147
CP009287
Bacillota
Paenibacillus graminis DSM 15220 [CP009287]
2840445
2840530
+
Leu
CAG
[Ensembl]
¡û
>C151104402
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
3141020
3141107
+
Leu
CAG
[Ensembl]
¡û
>C151104450
LN831776
Bacillota
Paenibacillus riograndensis SBR5 [LN831776]
284689
284602
-
Leu
CAG
[Ensembl]
¡û
>W1510562397
CTED01000149
Bacillota
Paenibacillus ihuae GD6 [CTED]
10
97
+
Leu
CAG
[ENA]
¡û
>W1510562410
CTED01000541
Bacillota
Paenibacillus ihuae GD6 [CTED]
5329
5244
-
Leu
CAG
[ENA]
¡û
>W1511320836
JQCR01000003
Bacillota
Paenibacillus wynnii DSM 18334 [JQCR]
360285
360370
+
Leu
CAG
[ENA]
¡û
>W11177630
AGBD01000416
Bacillota
Paenibacillus riograndensis SBR5 [AGBD]
11958
12045
+
Leu
CAG
[ENA]
¡û
>W11177646
AGBD01001764
Bacillota
Paenibacillus riograndensis SBR5 [AGBD]
152
239
+
Leu
CAG
[ENA]
¡û
>W1610632628
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
351867
351954
+
Leu
CAG
[ENA]
¡û
>W1610633901
LIRA01000835
Bacillota
Paenibacillus riograndensis [LIRA]
797
710
-
Leu
CAG
[ENA]
¡û
>W1610633964
LIRB01000129
Bacillota
Paenibacillus riograndensis [LIRB]
22218
22131
-
Leu
CAG
[ENA]
¡û
>W1610633986
LIRB01000140
Bacillota
Paenibacillus riograndensis [LIRB]
41528
41615
+
Leu
CAG
[ENA]
¡û
>W1610871122
LRAC01000087
Bacillota
Paenibacillus sp. DMB5 [LRAC]
99800
99885
+
Leu
CAG
[ENA]
¡û
>W1610871133
LRAC01000125
Bacillota
Paenibacillus sp. DMB5 [LRAC]
18719
18632
-
Leu
CAG
[ENA]
¡û
>W1610871147
LRAC01000147
Bacillota
Paenibacillus sp. DMB5 [LRAC]
232856
232769
-
Leu
CAG
[ENA]
¡û
>W1611057163
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
1080615
1080530
-
Leu
CAG
[ENA]
¡û
>W1611057164
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
962917
962831
-
Leu
CAG
[ENA]
¡û
>W1611057165
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
958980
958893
-
Leu
CAG
[ENA]
¡û
>W1611057166
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
930761
930674
-
Leu
CAG
[ENA]
¡û
>W1611057167
MAQW01000012
Bacillota
Bacillus sp. FJAT-27264 [MAQW]
897821
897734
-
Leu
CAG
[ENA]
¡û
>W1710518237
FNDX01000001
Bacillota
Paenibacillus typhae [FNDX]
47528
47615
+
Leu
CAG
[ENA]
¡û
>W1710518238
FNDX01000001
Bacillota
Paenibacillus typhae [FNDX]
146907
146994
+
Leu
CAG
[ENA]
¡û
>W1710518245
FNDX01000005
Bacillota
Paenibacillus typhae [FNDX]
35964
36049
+
Leu
CAG
[ENA]
¡û
>W1710521536
FNGM01000001
Bacillota
Paenibacillus jilunlii [FNGM]
352602
352689
+
Leu
CAG
[ENA]
¡û
>W1710705050
LCZJ02000026
Bacillota
Paenibacillus etheri [LCZJ]
163848
163761
-
Leu
CAG
[ENA]
¡û
>W1710705051
LCZJ02000026
Bacillota
Paenibacillus etheri [LCZJ]
54778
54691
-
Leu
CAG
[ENA]
¡û
>W1710767014
LIPY01000122
Bacillota
Paenibacillus jilunlii [LIPY]
351867
351954
+
Leu
CAG
[ENA]
¡û
>W1710768333
LIRA01000835
Bacillota
Paenibacillus riograndensis [LIRA]
797
710
-
Leu
CAG
[ENA]
¡û
>W1710768396
LIRB01000129
Bacillota
Paenibacillus riograndensis [LIRB]
22218
22131
-
Leu
CAG
[ENA]
¡û
>W1710768418
LIRB01000140
Bacillota
Paenibacillus riograndensis [LIRB]
41528
41615
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK